Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq120 134 3e-26
seq456 118 2e-21
seq154 87.8 4e-12
>seq120
Length=409222
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||||||||| || ||||||||||| |||| |||||||||| ||| || | |||||
Sbjct 293700 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCC 293759
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || ||||| |||||||||||||| || ||| ||| || || |||
Sbjct 293760 TCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 293819
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| || | ||||| | | || || || | |||||||||
Sbjct 293820 TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTC 293879
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | ||| || || || || ||
Sbjct 293880 TTTCCGGTCAAAGTCTTGACGAAGATCTG 293908
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | |||||| || |||||||| |||| ||||||||| | || ||
Sbjct 294147 CGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 294206
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || |||||||| | ||||||||||| || ||| ||
Sbjct 294207 CGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCC 294266
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| |||| ||| || | | || || || |
Sbjct 294267 TCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGG 294326
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617
||||| ||||| || || || || || ||
Sbjct 294327 GTGATGGTCTTGCCGGTAAGCGTCTTGAC 294355
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || ||||| || ||||| || | ||||||||| | || || | || ||
Sbjct 293928 AGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 293987
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || |||||||| | ||||||||||| || || || || ||
Sbjct 293988 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 294047
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| |||| |||||||| | ||| || || | || || |||
Sbjct 294048 TGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 294107
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || ||
Sbjct 294108 TTGCCAGTGAGGGTCTTAACGAAGATCTG 294136
Score = 98.7 bits (108), Expect = 2e-15
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| || || |||||||| |||| ||||||||| | || ||
Sbjct 294431 CGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 294490
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || |||||||| | ||||||||||| || ||| ||
Sbjct 294491 CGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCC 294550
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| |||| ||| || | | || || || |
Sbjct 294551 TCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGG 294610
Query 199589 GTGATCGTCTTACCCGTGA 199607
|| || ||||| || ||||
Sbjct 294611 GTAATGGTCTTGCCGGTGA 294629
>seq456
Length=89672
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| | ||| ||||| |||||||| |||| ||||||||| | | ||
Sbjct 20949 CGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 20890
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || ||||||||||| |||||||| || ||||||||||| || || ||
Sbjct 20889 CGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCC 20830
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || || |
Sbjct 20829 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 20770
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||||||||| || || || || || ||
Sbjct 20769 GTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 20732
>seq154
Length=370784
Score = 87.8 bits (96), Expect = 4e-12
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 199432 AGTCGACT--CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489
|||| ||| |||| |||| ||||||||| | | || | || || || ||||||||
Sbjct 211239 AGTCCACTGACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTG 211180
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
||||||||||| | ||||||||||| || ||| || || ||||| ||||| |
Sbjct 211179 CCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 211120
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
|| || |||| ||||| | | || || || | || || ||||||||||| ||
Sbjct 211119 TTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGG 211060
Query 199610 GTTTTCACAAAA 199621
|| ||||| |||
Sbjct 211059 GTCTTCACGAAA 211048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178905951289412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |