Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq154 138 1e-27
seq456 136 4e-27
seq120 132 5e-26
>seq154
Length=370784
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| |
Sbjct 211229 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 211170
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||||| || | || |||||||||| |||||| ||||| |
Sbjct 211169 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 211110
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || || | || ||||| || |||||||| || || || |
Sbjct 211109 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 211050
Query 46584 A 46584
|
Sbjct 211049 A 211049
>seq456
Length=89672
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||| || | ||| |||||| ||||| ||||||||||| || ||||| ||
Sbjct 20943 CGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 20884
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| || ||||| |||| |||||||||||| | || | || |||||||
Sbjct 20883 TCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 20824
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| || ||||| || | |||||
Sbjct 20823 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 20764
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || ||||| || || || || ||||| |||||
Sbjct 20763 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729
>seq120
Length=409222
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| ||| ||||| || || ||||||||||| || ||||| |||| ||
Sbjct 293931 ACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 293990
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| ||||||||||||||||||| || | | |||||| ||
Sbjct 293991 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGA 294050
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| ||| | | | ||||| |||||| || || | || || || ||
Sbjct 294051 ATCTTCGACTTGA-CGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTT 294109
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || ||||| ||||| |||||
Sbjct 294110 GCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139
Score = 129 bits (142), Expect = 7e-25
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| || | ||| |||||| ||||| ||||||||||| || ||||| |
Sbjct 294152 ACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 294211
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || |||||||| || ||||| ||||||||||||||||||| || | || ||||||
Sbjct 294212 GTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTT 294271
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| ||||| ||| | ||| | | | || ||| || || || || | ||||
Sbjct 294272 GTCCTGAATCTTGGACTTCA-CGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGA 294330
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAAC 46581
|||| ||||| || ||||| || ||
Sbjct 294331 TGGTCTTGCCGGTAAGCGTCTTGAC 294355
Score = 109 bits (120), Expect = 6e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || |||||||| || |||||
Sbjct 294460 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAA 294519
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
||||||||||||||||||| || | || |||||||||| |||||
Sbjct 294520 GATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 294567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565231080162720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |