Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq444 154 1e-32
seq120 132 5e-26
seq456 127 2e-24
seq154 111 2e-19
>seq444
Length=118335
Score = 154 bits (170), Expect = 1e-32
Identities = 200/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||||||||| ||| || | || ||||| | ||||||||| |||||| ||
Sbjct 60897 GTAGGTGTCGATGAGCAACGAGTAGGTCTCTGAGTGGATGTTCTCCATCATGATTTGGAA 60838
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||| || ||||| || |||||| |||||| || || ||| |||||||||| ||
Sbjct 60837 GCCATAGAAGCAACGGGCCTCGGGCACCTGGACCTCGCCGCTGAAGCGCTCGACCAAGTT 60778
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| ||||| ||| || ||||| ||||| || | |||| |||||| |
Sbjct 60777 CTCGTTGACAATGCCATCGGAAGCAGCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 60718
Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | |||| || | | ||||||| | ||||||||||| || | ||||||
Sbjct 60717 CTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTC 60658
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || || ||||| || || ||||||||
Sbjct 60657 GGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 60622
Score = 125 bits (138), Expect = 7e-24
Identities = 325/485 (67%), Gaps = 18/485 (4%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
|||||||| || || || || || ||| || ||| | |||||| || || || |||
Sbjct 61500 TTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATAAAGTCGAACGGATTG 61441
Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | |||||| |||| |||| | || | || | || | ||| || ||||||
Sbjct 61440 GAAGACTTGTAGACCTTGTCATTGCCAAG-AG--CAACCAAGAGACGGTCAGCGACGAAC 61384
Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCT 132798
|| ||||| ||| ||| |||| | | || | || |||||| |||| ||||| ||
Sbjct 61383 TCAATGTACTGCTTCATCAGGTT--GGAGTTCATGCCGAGCAGAGCGCAA-GGCAGAGCC 61327
Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858
||||| || || |||||||| ||| || ||| | || ||| || | | |
Sbjct 61326 TCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGTCCTCAATGACCTGC 61267
Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918
||| || || | | | || | | | | ||| ||||||||| || | |||
Sbjct 61266 TTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCC 61207
Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978
|| || | || ||||| |||||| ||| |||| || ||||| || || || || |||
Sbjct 61206 TCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTTCTTG 61147
Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038
||||| || |||| |||||| || ||||||| ||||||||||| ||||| ||
Sbjct 61146 AGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCA 61087
Query 133039 ACCAGGCGCTCGCCGAACGTGG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095
|| ||||||| | |||| | || ||||| | ||| |||||| ||| ||||| |||
Sbjct 61086 ACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCGCT---GATCCACTTCAGAGCCCAGTCG 61030
Query 133096 GCCTT 133100
|||||
Sbjct 61029 GCCTT 61025
>seq120
Length=409222
Score = 132 bits (146), Expect = 5e-26
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || ||||| || ||||| ||||||||| | || |||||| || |||| | | |
Sbjct 294357 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCG 294298
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| | || || || | ||||| ||||| |||||| ||||||| ||||| |
Sbjct 294297 ACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 294239
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || |||| |||||||| ||||||||||||||| |||
Sbjct 294238 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAG 294179
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || || || ||||||||||||
Sbjct 294178 GAGTCTACCCTCCACTTGGTGCTGCGT 294152
Score = 109 bits (120), Expect = 5e-19
Identities = 142/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||| ||| | || |||||| || |||| | | | | |||| | ||
Sbjct 294629 TCACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACG-TGAAG 294571
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| || | ||||| ||||| |||||| ||||||| ||||| | || | ||| ||
Sbjct 294570 TCTAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGT 294511
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || |||| |||||||| ||||||||||||||| ||||| | || ||
Sbjct 294510 AAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTT 294451
Query 38445 CATTTGGTGCTGCG 38458
|| ||||| || ||
Sbjct 294450 CACTTGGTTCTCCG 294437
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || || || ||||| | || |||||| | |
Sbjct 293911 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 293852
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || || | ||||| ||||| ||||| |||| ||
Sbjct 293851 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 293793
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||||| ||| ||||| ||| |||| || | |||||| | | ||||||||
Sbjct 293792 GCAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAA 293733
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| ||||||| || | || || ||| || | || ||
Sbjct 293732 CATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGG 293685
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || || ||| | || ||||| | |
Sbjct 294139 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 294080
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | || || ||||| || ||| |||||||
Sbjct 294079 GACACCATCGACAACG-TCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCA 294021
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||| ||||| || |||| |||||||| |||||||||
Sbjct 294020 GCAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAA 293961
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| || |||||| | || |||||| | || || ||
Sbjct 293960 CATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCG 293925
>seq456
Length=89672
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || |||||| | || || ||| | ||
Sbjct 20729 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 20788
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| | |||||
Sbjct 20789 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 20848
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || || ||||| || |||| ||||||||| ||||||||||
Sbjct 20849 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 20908
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || ||||| |||||
Sbjct 20909 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCG 20943
>seq154
Length=370784
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 211049 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 211108
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| ||||||| ||||| |
Sbjct 211109 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 211168
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 211169 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 211228
Query 38433 G 38433
|
Sbjct 211229 G 211229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500166322762240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |