Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq444 154 1e-32 seq120 132 5e-26 seq456 127 2e-24 seq154 111 2e-19 >seq444 Length=118335 Score = 154 bits (170), Expect = 1e-32 Identities = 200/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| || | || ||||| | ||||||||| |||||| || Sbjct 60897 GTAGGTGTCGATGAGCAACGAGTAGGTCTCTGAGTGGATGTTCTCCATCATGATTTGGAA 60838 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || ||||| || |||||| |||||| || || ||| |||||||||| || Sbjct 60837 GCCATAGAAGCAACGGGCCTCGGGCACCTGGACCTCGCCGCTGAAGCGCTCGACCAAGTT 60778 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| ||| || ||||| ||||| || | |||| |||||| | Sbjct 60777 CTCGTTGACAATGCCATCGGAAGCAGCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 60718 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | ||||||| | ||||||||||| || | |||||| Sbjct 60717 CTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTC 60658 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || ||||| || || |||||||| Sbjct 60657 GGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 60622 Score = 125 bits (138), Expect = 7e-24 Identities = 325/485 (67%), Gaps = 18/485 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || ||| || ||| | |||||| || || || ||| Sbjct 61500 TTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATAAAGTCGAACGGATTG 61441 Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| |||| |||| | || | || | || | ||| || |||||| Sbjct 61440 GAAGACTTGTAGACCTTGTCATTGCCAAG-AG--CAACCAAGAGACGGTCAGCGACGAAC 61384 Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCT 132798 || ||||| ||| ||| |||| | | || | || |||||| |||| ||||| || Sbjct 61383 TCAATGTACTGCTTCATCAGGTT--GGAGTTCATGCCGAGCAGAGCGCAA-GGCAGAGCC 61327 Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 ||||| || || |||||||| ||| || ||| | || ||| || | | | Sbjct 61326 TCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGTCCTCAATGACCTGC 61267 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| || || | | | || | | | | ||| ||||||||| || | ||| Sbjct 61266 TTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCC 61207 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 || || | || ||||| |||||| ||| |||| || ||||| || || || || ||| Sbjct 61206 TCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTTCTTG 61147 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| |||||| || ||||||| ||||||||||| ||||| || Sbjct 61146 AGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCA 61087 Query 133039 ACCAGGCGCTCGCCGAACGTGG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 || ||||||| | |||| | || ||||| | ||| |||||| ||| ||||| ||| Sbjct 61086 ACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCGCT---GATCCACTTCAGAGCCCAGTCG 61030 Query 133096 GCCTT 133100 ||||| Sbjct 61029 GCCTT 61025 >seq120 Length=409222 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || ||||| || ||||| ||||||||| | || |||||| || |||| | | | Sbjct 294357 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCG 294298 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || || | ||||| ||||| |||||| ||||||| ||||| | Sbjct 294297 ACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 294239 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || |||| |||||||| ||||||||||||||| ||| Sbjct 294238 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAG 294179 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || |||||||||||| Sbjct 294178 GAGTCTACCCTCCACTTGGTGCTGCGT 294152 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||| ||| | || |||||| || |||| | | | | |||| | || Sbjct 294629 TCACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACG-TGAAG 294571 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | ||||| ||||| |||||| ||||||| ||||| | || | ||| || Sbjct 294570 TCTAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGT 294511 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| |||||||| ||||||||||||||| ||||| | || || Sbjct 294510 AAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTT 294451 Query 38445 CATTTGGTGCTGCG 38458 || ||||| || || Sbjct 294450 CACTTGGTTCTCCG 294437 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || ||||| | || |||||| | | Sbjct 293911 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 293852 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || || | ||||| ||||| ||||| |||| || Sbjct 293851 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 293793 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| ||||| ||| |||| || | |||||| | | |||||||| Sbjct 293792 GCAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAA 293733 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||||||| || | || || ||| || | || || Sbjct 293732 CATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGG 293685 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || || ||| | || ||||| | | Sbjct 294139 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 294080 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | || || ||||| || ||| ||||||| Sbjct 294079 GACACCATCGACAACG-TCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCA 294021 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| ||||| || |||| |||||||| ||||||||| Sbjct 294020 GCAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAA 293961 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || |||||| | || |||||| | || || || Sbjct 293960 CATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCG 293925 >seq456 Length=89672 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 20729 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 20788 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 20789 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 20848 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 20849 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 20908 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || ||||| ||||| Sbjct 20909 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCG 20943 >seq154 Length=370784 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 211049 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 211108 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| ||||||| ||||| | Sbjct 211109 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 211168 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 211169 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 211228 Query 38433 G 38433 | Sbjct 211229 G 211229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166322762240