Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq373 239 6e-58 seq338 145 1e-29 seq55 145 1e-29 seq416 100 4e-16 >seq373 Length=169308 Score = 239 bits (264), Expect = 6e-58 Identities = 486/722 (67%), Gaps = 0/722 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||||||||| ||||| | || ||||| || || ||||| |||||||| Sbjct 39043 TCACCGGACAGGATGGCGGCCTGGACAGCGGCACCGTAGGCAACGGCCTCGTCGGGGTTG 39102 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || || || | | | || || ||| Sbjct 39103 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 39162 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || ||||||| || || || | || | || || |||||||| | | Sbjct 39163 ATACGGGTGGAACCTCCGACCAGGACAATCTCGTGGACCTGGGACTTGTCGATCTTGGCG 39222 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || ||||| || | || ||||||| |||| || || ||| Sbjct 39223 TCGGACAGGACGCGGTCGACGGGCTGGATGGTCGAGCGGAACAGGTCCTGGCAGAGCTCC 39282 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || |||||||| ||||| || ||||| || | ||| ||| | | ||| || || Sbjct 39283 TCGAAGCGGGCACGGGTGATGGACGTGTAGAAGTCGATGCCCTCGAACAGCGAGTCGATC 39342 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || || | || ||||| || ||||| || || || || Sbjct 39343 TCGATGGAGGTCTGCGCGGAGGAGGACAGAGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 39402 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || ||||| || | ||| || | || ||||| || || || || ||||| Sbjct 39403 AGACGGCGCAGGGCGCGGGCGTTGGTAGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCG 39462 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | |||||| | ||| | || || || |||||||||||||| || || || Sbjct 39463 TTGACGAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCACCACCCAAGTGGGTGTCACCA 39522 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 ||||||| ||||| || ||||| || | |||||| | | | || ||||| || ||| Sbjct 39523 GCGGTCGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAGGTA 39582 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 ||||| || || || || ||||| ||||| ||| | || ||||| || |||||| Sbjct 39583 CCACCGCCGAGATCGAAGATGAGCACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAGACCG 39642 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 ||||| || || || || ||||| || || || || || || ||| ||||| ||||| Sbjct 39643 TACGCAATGGCGGCAGCGGTTGGCTCGTTGATGATGCGGAGCACGTTGAGGCCGGCAATG 39702 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | || || || || || || || || || ||||| |||||||| || || || || Sbjct 39703 AGACCGGCGTCCTTGGTAGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGAACGGTGACA 39762 Query 7730 AC 7731 || Sbjct 39763 AC 39764 >seq338 Length=188146 Score = 145 bits (160), Expect = 1e-29 Identities = 344/516 (67%), Gaps = 13/516 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| || || || ||| ||| || ||| | | || Sbjct 49144 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 49200 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| || || || || | ||| || ||||| || ||||| || | Sbjct 49201 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 49258 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | ||| || || ||||| |||| ||||| | || ||||| || || | Sbjct 49259 CAGTGCGGAGACGGCGGAGAGCACGGGGGTCGCCGGAGAGGTCCTTCTTGGTCTTGCGCT 49318 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| ||||| | | |||||||| | |||||||||||| | Sbjct 49319 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAATCCTGACCACCCAAGTGGG 49378 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| |||| ||| || | ||||| | | ||||||| Sbjct 49379 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 49438 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598 | || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 49439 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 49498 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||| | Sbjct 49499 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 49558 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||| || || | | ||||| || || || || || || ||||| |||||||| | Sbjct 49559 GGCCGGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCAG 49618 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| || | ||| || | | || ||||| |||| Sbjct 49619 GGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGA 49654 >seq55 Length=79064 Score = 145 bits (160), Expect = 1e-29 Identities = 248/356 (70%), Gaps = 9/356 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || || ||| || |||| ||| Sbjct 53441 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAGACACCC 53382 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC---AAAAATGAGT 7573 || ||| | || |||||||| || ||||||||||| ||||| || ||||| Sbjct 53381 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAAACAATGA-- 53324 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || ||| |||| | |||| || |||||||| |||||||| || || || || Sbjct 53323 TCTGGCG-CTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCAGTGGGC 53268 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | ||| ||||| ||| || || ||||| | | ||||| || || || || Sbjct 53267 TCGTTGACAATGCGAAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGG 53208 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| | Sbjct 53207 CGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTGGGTGACCTTCTTGCTC 53148 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || | || |||| || ||||| ||| || | ||| | |||| ||| || Sbjct 53147 AGGTAGGCCTCGGCGACCTCCTTCATCTTGCCCAGGATCATGGCGGAAACCTCCTC 53092 >seq416 Length=218108 Score = 100 bits (110), Expect = 4e-16 Identities = 223/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||| ||| ||||| || ||| | ||||| || |||| ||| Sbjct 176742 TCAAAGTCCTCACCACCCAGGTGGGTATCACCGTTGGTAGACTTGACCTCGAAGACACCG 176801 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || | | | ||| Sbjct 176802 TTCTGGATCTCGAGAACGGAGATATCGAAAGTACCACCACCAAGATCGTAGACGGCGACG 176861 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | ||| | | ||| || |||||||| || | ||| || || || || || Sbjct 176862 AT------GCGGTCATCCTCCTTCTCCAGACCGTAGGCCAGAGCAGCGGCAGTGGGCTCG 176915 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||| || ||| ||| ||||||||| ||||| | ||||| || || || || || Sbjct 176916 TTAACAACACGGAGAACGTTCAGGCCGGCAATCTGACCGGCATCCTTGGTAGCCTGACGC 176975 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || |||||||| ||||| || ||||| |||| | |||| ||| || Sbjct 176976 TGGGAGTCATTGAAGTAGGCAGGGACGGTGACGACGGCGTTCTTGACAGGCTTGGACAGG 177035 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | || ||| | || ||||| ||| | || || Sbjct 177036 TAGGCCTCAGCGGTCTCCTTCATCTTGTTGAGGAC 177070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635124575030240