Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq373 239 6e-58
seq338 145 1e-29
seq55 145 1e-29
seq416 100 4e-16
>seq373
Length=169308
Score = 239 bits (264), Expect = 6e-58
Identities = 486/722 (67%), Gaps = 0/722 (0%)
Strand=Plus/Plus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||||||||| ||||| | || ||||| || || ||||| ||||||||
Sbjct 39043 TCACCGGACAGGATGGCGGCCTGGACAGCGGCACCGTAGGCAACGGCCTCGTCGGGGTTG 39102
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || || || || | | | || || |||
Sbjct 39103 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 39162
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || || ||||||| || || || | || | || || |||||||| | |
Sbjct 39163 ATACGGGTGGAACCTCCGACCAGGACAATCTCGTGGACCTGGGACTTGTCGATCTTGGCG 39222
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || ||||| || | || ||||||| |||| || || |||
Sbjct 39223 TCGGACAGGACGCGGTCGACGGGCTGGATGGTCGAGCGGAACAGGTCCTGGCAGAGCTCC 39282
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| || || |||||||| ||||| || ||||| || | ||| ||| | | ||| || ||
Sbjct 39283 TCGAAGCGGGCACGGGTGATGGACGTGTAGAAGTCGATGCCCTCGAACAGCGAGTCGATC 39342
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | || || | || ||||| || ||||| || || || ||
Sbjct 39343 TCGATGGAGGTCTGCGCGGAGGAGGACAGAGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 39402
Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429
| ||| || ||||| || | ||| || | || ||||| || || || || |||||
Sbjct 39403 AGACGGCGCAGGGCGCGGGCGTTGGTAGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCG 39462
Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489
| |||||| | ||| | || || || |||||||||||||| || || ||
Sbjct 39463 TTGACGAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCACCACCCAAGTGGGTGTCACCA 39522
Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549
||||||| ||||| || ||||| || | |||||| | | | || ||||| || |||
Sbjct 39523 GCGGTCGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAGGTA 39582
Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609
||||| || || || || ||||| ||||| ||| | || ||||| || ||||||
Sbjct 39583 CCACCGCCGAGATCGAAGATGAGCACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAGACCG 39642
Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669
||||| || || || || ||||| || || || || || || ||| ||||| |||||
Sbjct 39643 TACGCAATGGCGGCAGCGGTTGGCTCGTTGATGATGCGGAGCACGTTGAGGCCGGCAATG 39702
Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729
| || || || || || || || || || ||||| |||||||| || || || ||
Sbjct 39703 AGACCGGCGTCCTTGGTAGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGAACGGTGACA 39762
Query 7730 AC 7731
||
Sbjct 39763 AC 39764
>seq338
Length=188146
Score = 145 bits (160), Expect = 1e-29
Identities = 344/516 (67%), Gaps = 13/516 (3%)
Strand=Plus/Plus
Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
||||| ||||| |||||||| || || || ||| ||| || ||| | | ||
Sbjct 49144 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 49200
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
|| || |||||||| || || || || | ||| || ||||| || ||||| || |
Sbjct 49201 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 49258
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| || || | ||| || || ||||| |||| ||||| | || ||||| || || |
Sbjct 49259 CAGTGCGGAGACGGCGGAGAGCACGGGGGTCGCCGGAGAGGTCCTTCTTGGTCTTGCGCT 49318
Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481
|| || | | |||| ||||| | | |||||||| | |||||||||||| |
Sbjct 49319 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAATCCTGACCACCCAAGTGGG 49378
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
| || || || || || ||||| |||| ||| || | ||||| | | |||||||
Sbjct 49379 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 49438
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598
| || ||||||||||||| ||| | ||||| ||||| || | | | |||
Sbjct 49439 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 49498
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| | |||||||| || || || || || || || || || || ||||| || ||| |
Sbjct 49499 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 49558
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
|||| || || | | ||||| || || || || || || ||||| |||||||| |
Sbjct 49559 GGCCGGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCAG 49618
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
|||| || | ||| || | | || ||||| ||||
Sbjct 49619 GGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGA 49654
>seq55
Length=79064
Score = 145 bits (160), Expect = 1e-29
Identities = 248/356 (70%), Gaps = 9/356 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || || || || ||| || |||| |||
Sbjct 53441 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAGACACCC 53382
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC---AAAAATGAGT 7573
|| ||| | || |||||||| || ||||||||||| ||||| || |||||
Sbjct 53381 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAAACAATGA-- 53324
Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
| || ||| |||| | |||| || |||||||| |||||||| || || || ||
Sbjct 53323 TCTGGCG-CTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCAGTGGGC 53268
Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693
|| || | ||| ||||| ||| || || ||||| | | ||||| || || || ||
Sbjct 53267 TCGTTGACAATGCGAAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGG 53208
Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753
|| || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| |
Sbjct 53207 CGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTGGGTGACCTTCTTGCTC 53148
Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| || | || |||| || ||||| ||| || | ||| | |||| ||| ||
Sbjct 53147 AGGTAGGCCTCGGCGACCTCCTTCATCTTGCCCAGGATCATGGCGGAAACCTCCTC 53092
>seq416
Length=218108
Score = 100 bits (110), Expect = 4e-16
Identities = 223/335 (67%), Gaps = 6/335 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||||| ||| ||||| || ||| | ||||| || |||| |||
Sbjct 176742 TCAAAGTCCTCACCACCCAGGTGGGTATCACCGTTGGTAGACTTGACCTCGAAGACACCG 176801
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || | | | || | ||| || ||||||||||| || || | | | |||
Sbjct 176802 TTCTGGATCTCGAGAACGGAGATATCGAAAGTACCACCACCAAGATCGTAGACGGCGACG 176861
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| | ||| | | ||| || |||||||| || | ||| || || || || ||
Sbjct 176862 AT------GCGGTCATCCTCCTTCTCCAGACCGTAGGCCAGAGCAGCGGCAGTGGGCTCG 176915
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|||| || ||| ||| ||||||||| ||||| | ||||| || || || || ||
Sbjct 176916 TTAACAACACGGAGAACGTTCAGGCCGGCAATCTGACCGGCATCCTTGGTAGCCTGACGC 176975
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || || || |||||||| ||||| || ||||| |||| | |||| ||| ||
Sbjct 176976 TGGGAGTCATTGAAGTAGGCAGGGACGGTGACGACGGCGTTCTTGACAGGCTTGGACAGG 177035
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791
|| | || ||| | || ||||| ||| | || ||
Sbjct 177036 TAGGCCTCAGCGGTCTCCTTCATCTTGTTGAGGAC 177070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635124575030240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |