Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq431 260 2e-64 seq444 141 1e-28 >seq431 Length=114165 Score = 260 bits (288), Expect = 2e-64 Identities = 960/1493 (64%), Gaps = 27/1493 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | |||||| || || || |||| || Sbjct 109155 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 109214 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || |||||| | | |||| |||||| | || || |||||| Sbjct 109215 ATCGAAACCTACAACCTGATGTCGAGCAAATTCTTCACCCACGCTTCTCCCACACTCTTC 109274 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || |||| ||||| ||| ||||| | | | |||||||| Sbjct 109275 AACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGAC 109334 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || |||| ||| |||| || ||| ||||| ||| ||| ||| Sbjct 109335 TCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGT 109394 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || | || | ||| || | |||| | || |||| || || || Sbjct 109395 GGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTATATTGCCGGCACTAAC 109454 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||| | | || ||||| || || || ||| ||| || ||||| || Sbjct 109455 GGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTC 109514 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | ||| ||| ||| || |||| |||| |||||||| |||||||| Sbjct 109515 GACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCC 109574 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| || | || ||| | || |||| ||||| || | ||||||| || ||| Sbjct 109575 GATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGT 109634 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || || ||| ||||||||||||||| || |||||||||||||| || ||| ||| || Sbjct 109635 GACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGAAGAACGGG 109694 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAG 112208 | ||| ||||| | || || || || || || || |||| | || |||||| Sbjct 109695 GACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAG 109754 Query 112209 TTTGAAGCCCTCTACACAAAGTACGAG--GAAG----AAAGTCGGGCGACTGCGACGGTG 112262 || || ||| | ||| ||||||||| || | | |||| ||| || || Sbjct 109755 TTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATGAAGG-C 109813 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 |||| || | ||| | || || ||| || | || ||||||||||| | || | Sbjct 109814 CCAGAAGC-----TCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCTTTC 109868 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||| ||||| || ||| |||| ||||| || || ||||| | || ||| Sbjct 109869 ATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGC 109928 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 || ||||||||||| || || ||| | || | | |||||| || || || Sbjct 109929 AGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCGCGGTCTGC 109988 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GATT 112500 ||||| || || |||| | |||| | ||| || | | | || | | | | | || | Sbjct 109989 AACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGA-CTACA-ACGAGGGCGTCTACGACT 110046 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || | ||| ||||| |||||| | || || Sbjct 110047 TCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCATCGACG 110106 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||| ||| || ||||| || || ||| | ||||| || ||||||| Sbjct 110107 TCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGTCACCGCCCCATTGGTC 110166 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGAC 112679 |||||||||| ||||| || |||| ||| | || || ||| | || || || Sbjct 110167 TCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTG-CGCATGCCCTTCGAGTCTCCT 110225 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || || | || | || |||||||| || || ||||| || || | Sbjct 110226 GAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACGCTGCCCT---CACC 110282 Query 112740 AGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 | |||| || |||| ||| || || || || | || | |||||||| || | Sbjct 110283 ATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCCGTC 110342 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGG 112856 || || || | || || | || |||||| | | || || | || || |||||| Sbjct 110343 TCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGG 110402 Query 112857 GACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 112916 |||||| | ||||| | |||||| || | ||| | || ||| |||| | | || || Sbjct 110403 GACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCCC 110462 Query 112917 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976 ||||| || || |||| | || |||||||| || || || |||||||| |||||||| Sbjct 110463 ATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACACC 110522 Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036 | |||||||| | | || | || || || ||||| | | |||||| ||| Sbjct 110523 TCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAACCCTTGGCTC 110582 Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 || | ||||| || || ||| | |||||| | | |||||| | | ||| Sbjct 110583 TTGAAGGACCTTGTCGACATGGGTTTGTGGTCCGATGCCATGAAGAACCGCAT 110635 >seq444 Length=118335 Score = 141 bits (156), Expect = 1e-28 Identities = 174/236 (74%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155 |||||| |||||||| || || | ||||| || || |||||| |||||||| | Sbjct 60998 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGC 61054 Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215 || ||||| ||||| || |||| ||| | || || || || ||||||||| Sbjct 61055 GACGAGAAGTCC---TCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATC 61111 Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275 |||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| ||| Sbjct 61112 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGT 61171 Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||||||||||||| ||||||||||| ||||| |||||| || ||||| Sbjct 61172 CTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGC 61227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734361385920