Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq431 183 4e-41
seq444 109 6e-19
>seq431
Length=114165
Score = 183 bits (202), Expect = 4e-41
Identities = 1042/1644 (63%), Gaps = 55/1644 (3%)
Strand=Plus/Minus
Query 105697 CTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTC 105756
||||||||||||| |||||| | || ||||| | | ||| | ||||||
Sbjct 110771 CTGGTCAATGAAGGCACCACGGTCGGCAGCCATCTGCACGACGGTACGCTGAGAGATTTC 110712
Query 105757 CCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGA 105816
||| || || ||| || ||||| ||| ||||| | | ||| || || || ||
Sbjct 110711 CCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGGATCGA 110652
Query 105817 ACC---CCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTT 105873
||| | | || ||| || | | |||||| | | |||||| | ||| || |
Sbjct 110651 ACCGTTCTCGGCAATGA---TGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCGAC 110595
Query 105874 GAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAG 105933
|| || || | ||| |||||| | | ||||| || || || | || | |
Sbjct 110594 AAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTG 110535
Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993
|||||||| | |||||||| |||||||| || || || |||||||| || | ||||
Sbjct 110534 GTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCT 110475
Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053
|| || ||||| || || | | |||| ||| || | ||| | | |||||| | ||
Sbjct 110474 AGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTC 110415
Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGA 106111
||| | | | |||||||| || || | || || || |||| |||| || | ||
Sbjct 110414 CTTCAAAGCGTCCCAGTCCCAGA-GATCCGAGGGCTTGACATTCC-ACATGTCGTACTGG 110357
Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171
|| | || || || ||| |||||||| | |||| |||| || | | | |||
Sbjct 110356 AGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCC 110297
Query 106172 AATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230
| | ||| | | |||| ||||| || ||||| |||||||| || |
Sbjct 110296 AGCTGCACCGACATGGTG-AGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAG 110238
Query 106231 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 106285
|| || ||| || || || |||| || | || || |||| ||
Sbjct 110237 GTCGCGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGG-----CATCAGCA 110183
Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 106345
||||| || ||||| | |||||| || | ||| ||||| || || || || || |
Sbjct 110182 AGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCTGA 110123
Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405
|| || || || ||| |||| || ||| || || | ||||| || ||||
Sbjct 110122 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACC 110063
Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGG 106462
|| || || || | | || | || ||| | | | ||| | | || | |
Sbjct 110062 TCGTGGAGCTTCTGGAAGTCGTAGACGCC---CTCGTTGTAGTCAACAAAGGTGGGCAAG 110006
Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522
|||| || |||| ||||| || || |||||| | |||||| | || ||
Sbjct 110005 GCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCC 109946
Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582
|| || | |||||| || || || || | ||||| ||||| ||||| ||||
Sbjct 109945 GTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 109886
Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642
|||||||||||||||||| | || | || ||||| ||||| | || ||| || || | |
Sbjct 109885 GCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATAC 109826
Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTTTGT 106698
|| | | || | | || |||| ||| ||| | ||| | |||||||||
Sbjct 109825 CAGAGCTTCTGGGCCTTC----ATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTC 109770
Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 106758
||| | ||| || |||||||| || ||||| || || || || || || ||
Sbjct 109769 GTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCA 109710
Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818
| |||| ||| | || || ||| |||| ||||||||| ||||| |||||||| ||
Sbjct 109709 CATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAG 109650
Query 106819 GG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 106876
| | |||||| || | ||| |||| || | || ||||| || | ||
Sbjct 109649 AGCGAGGAAAAGG--TCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCC 109592
Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT----T 106932
| ||| || | || ||| |||||||| |||||||| |||| |||| || ||| |
Sbjct 109591 AAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGT 109532
Query 106933 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992
| | ||| | | || | || ||||| || ||| ||| || || || ||||| || |
Sbjct 109531 TTGTTGCC-ACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGAC 109473
Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 107052
| ||| | || ||| || || || |||| || |||| | | |||
Sbjct 109472 GACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATG 109413
Query 107053 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTT 107110
| || | ||||| || || ||| ||| ||||| | ||||| | || | || ||
Sbjct 109412 AACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTG 109355
Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170
| |||||||| | || ||||||||||| || ||| ||||||||| ||||| |||
Sbjct 109354 TCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG- 109296
Query 107171 GGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGG 107227
|| || || |||||||| |||||||| || || | ||||| |||| | | ||
Sbjct 109295 GGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCT--C 109238
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| || ||| || || | ||| |||| ||| || || ||| || | |||
Sbjct 109237 GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCG 109178
Query 107288 ACACGCATAAACATGTATTGGGGT 107311
|||||||| | ||||| ||||||
Sbjct 109177 ACACGCATGATCATGTGCTGGGGT 109154
>seq444
Length=118335
Score = 109 bits (120), Expect = 6e-19
Identities = 151/210 (72%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||||||||||||||| || || || || || || |||||| || ||
Sbjct 61228 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 61169
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
||||| ||||| |||||||| | ||| | || | | ||| | ||| |||||||||
Sbjct 61168 AGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGAT 61109
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449
|||||| || || || |||| ||||||| |||||||||| ||||| |||
Sbjct 61108 ACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAG---GACTTCTCGTCGCT 61052
Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTT 117479
| ||| |||| ||||| | ||||||||
Sbjct 61051 GATCCACTTCAGAGCCCAGTCGGCCTTCTT 61022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589973159748640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |