Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq456 89.7 3e-13
seq120 82.4 5e-11
>seq456
Length=89672
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| ||||| || ||| | || | || ||
Sbjct 20937 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 20878
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||| || || || || || |||||||| | || | |||||||||||
Sbjct 20877 AGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 20818
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || || | ||| || ||
Sbjct 20817 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 20762
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| |||||||| ||||| || |||||||||||
Sbjct 20761 CTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729
>seq120
Length=409222
Score = 82.4 bits (90), Expect = 5e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||||||||| ||||| || ||| | || | || || ||||| || || || ||
Sbjct 293948 TTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 294007
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | || |||||||| | || | |||||||| || ||||||| ||||||
Sbjct 294008 GATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTGACGTT 294067
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | || | || || || | ||| || || || || ||||| ||||| ||
Sbjct 294068 GTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAAC 294127
Query 34970 AAAGATCTGCATA 34982
||||||||||||
Sbjct 294128 GAAGATCTGCATA 294140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324629501095008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |