Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq17 91.5 1e-13
>seq17
Length=653669
Score = 91.5 bits (100), Expect = 1e-13
Identities = 418/664 (63%), Gaps = 68/664 (10%)
Strand=Plus/Minus
Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834
||||||||| | ||| | ||| ||| |||| || ||||| || |||||| || ||
Sbjct 343882 TCTGGGCTCACGCTCCAACTGCACCTTGAGCGCATCAACGTGGTCGGCGTAGACATGTGC 343823
Query 29835 GTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29893
|| |||| | ||| | || || || || | || || || | || |||||||
Sbjct 343822 ATCGCCCATGACGTGCGTCAGGCTG-CCAGGGACGAGGTCGCATGCGCGGGCAATCATGT 343764
Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953
||| || || | |||||| |||||||| ||||| || || || |||||||| | ||||
Sbjct 343763 GCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCAAGGCCCATGTCACAGGACC 343704
Query 29954 TCTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC-------------- 29984
|||||| ||||| || || |||||||||
Sbjct 343703 GCTGGTACAGCTGGCAGTGCAGGTGGCCCTTTGGTTTCTCTCCGTCAGCGGGTGCAATGC 343644
Query 29985 --GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCA 30028
|| | ||||| || || | ||||| ||||| || || || ||||
Sbjct 343643 GGGCCCGCGGGTAGGAGACGTAGAATTGCGCAAACATG---TGGCAAGGCGGGAGGGCCA 343587
Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088
| | ||| ||||||||| |||| | | |||||| | ||| | |||||
Sbjct 343586 TCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGAAGGATGCGGCGGTCGTACGGGTTCG 343527
Query 30089 TCCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30142
|| | | || | || ||||| |||||||| || ||| |||| ||| |
Sbjct 343526 TCTTCAGCTTGTGGATGACCTCGGCG------AGCTGATCGACGCCCTGGCCCGTGTAAT 343473
Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202
| | | | ||| ||||| || || || || | ||| ||||| ||||| || || |
Sbjct 343472 CCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGC 343413
Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262
| ||||| || |||| | ||| || ||| |||| | || || | || ||||
Sbjct 343412 CGAGGTCGCCGACTTCGCGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGT 343353
Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTG 30321
|| ||||||||||||| || || |||| || | |||| |||| ||||| |
Sbjct 343352 TGCCGTCCCAGATCTTAACGCCTGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-G 343294
Query 30322 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGA 30379
||||||||||||||||| | | |||||| | || ||||| | ||| || || ||||
Sbjct 343293 ACGAACCACAGCAGCTCGGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTGGTAAGGA 343236
Query 30380 GGGG 30383
||||
Sbjct 343235 GGGG 343232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408612440692028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |