Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 1e-13 >seq17 Length=653669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 418/664 (63%), Gaps = 68/664 (10%) Strand=Plus/Minus Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834 ||||||||| | ||| | ||| ||| |||| || ||||| || |||||| || || Sbjct 343882 TCTGGGCTCACGCTCCAACTGCACCTTGAGCGCATCAACGTGGTCGGCGTAGACATGTGC 343823 Query 29835 GTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29893 || |||| | ||| | || || || || | || || || | || ||||||| Sbjct 343822 ATCGCCCATGACGTGCGTCAGGCTG-CCAGGGACGAGGTCGCATGCGCGGGCAATCATGT 343764 Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953 ||| || || | |||||| |||||||| ||||| || || || |||||||| | |||| Sbjct 343763 GCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCAAGGCCCATGTCACAGGACC 343704 Query 29954 TCTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC-------------- 29984 |||||| ||||| || || ||||||||| Sbjct 343703 GCTGGTACAGCTGGCAGTGCAGGTGGCCCTTTGGTTTCTCTCCGTCAGCGGGTGCAATGC 343644 Query 29985 --GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCA 30028 || | ||||| || || | ||||| ||||| || || || |||| Sbjct 343643 GGGCCCGCGGGTAGGAGACGTAGAATTGCGCAAACATG---TGGCAAGGCGGGAGGGCCA 343587 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | | ||| ||||||||| |||| | | |||||| | ||| | ||||| Sbjct 343586 TCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGAAGGATGCGGCGGTCGTACGGGTTCG 343527 Query 30089 TCCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30142 || | | || | || ||||| |||||||| || ||| |||| ||| | Sbjct 343526 TCTTCAGCTTGTGGATGACCTCGGCG------AGCTGATCGACGCCCTGGCCCGTGTAAT 343473 Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 | | | | ||| ||||| || || || || | ||| ||||| ||||| || || | Sbjct 343472 CCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGC 343413 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 | ||||| || |||| | ||| || ||| |||| | || || | || |||| Sbjct 343412 CGAGGTCGCCGACTTCGCGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGT 343353 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTG 30321 || ||||||||||||| || || |||| || | |||| |||| ||||| | Sbjct 343352 TGCCGTCCCAGATCTTAACGCCTGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-G 343294 Query 30322 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGA 30379 ||||||||||||||||| | | |||||| | || ||||| | ||| || || |||| Sbjct 343293 ACGAACCACAGCAGCTCGGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTGGTAAGGA 343236 Query 30380 GGGG 30383 |||| Sbjct 343235 GGGG 343232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612440692028