Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq120 98.7 8e-16
>seq120
Length=409222
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| || |||||||| || || || ||||| |||| | || | | | || || | ||
Sbjct 293936 ATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTG 293995
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || ||||| ||||| || ||||| || || || || ||||||||||| ||
Sbjct 293996 CTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTT 294055
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| || | || | ||||| |||| ||| || ||||| || | || ||||| ||
Sbjct 294056 CGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGT 294115
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 294116 GAGGGTCTTAACGAAGATCTGCAT 294139
Score = 87.8 bits (96), Expect = 1e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| || ||||||||||| || || || || ||||| |||| | || | | | || ||
Sbjct 294442 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTC 294501
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
| |||||||| || || ||||| ||||| || ||||| |||||||| || || || ||
Sbjct 294502 AAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 294561
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||| || || || | || | || || || | || || ||||| || | || ||
Sbjct 294562 AATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTT 294621
Query 101440 GCCGGT 101445
||||||
Sbjct 294622 GCCGGT 294627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396273396489852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |