Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq431 408 8e-109 seq444 176 8e-39 >seq431 Length=114165 Score = 408 bits (452), Expect = 8e-109 Identities = 1065/1600 (67%), Gaps = 82/1600 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| || ||||||||||| ||||| Sbjct 110914 ACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 110855 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| ||||||| | |||||| |||| ||| ||| || | | Sbjct 110854 AGACCGAGCTT---CCAGCCGGCGAAGTGCAT-GCTGGTGATTTTGCCCA------TGGT 110805 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | || || || | ||| || ||||| |||||| ||||| | | Sbjct 110804 CGGGTCCT--TCATG-------TGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACC 110754 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | || | ||| |||| ||||| || |||||| | | Sbjct 110753 ACGGTCGGCAGCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAG 110694 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA- 212847 | |||| || |||| | |||||||||||| | || || || | | | || Sbjct 110693 GGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGGATCGAACC---GT-TCTCGGCAA 110638 Query 212848 -GCTGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGT 212904 | ||| | |||| | ||| ||| | ||| || | ||| ||| | || Sbjct 110637 TGATGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCC 110578 Query 212905 GAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGT 212964 ||||||||| | |||||| ||||| | || || | | |||||| | ||| || |||| Sbjct 110577 AAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGT 110518 Query 212965 AGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAG 213024 ||||||| | || ||||||||| |||| ||||| | ||||| || || |||||||| | Sbjct 110517 AGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCG 110458 Query 213025 CCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC--CGAAGCTCTGCCCA 213082 | || || ||| ||| | || ||||||| ||| | | | |||| |||| Sbjct 110457 CGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGT--CCCA 110400 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| || ||| | ||| || ||||||||||| |||| | |||||| Sbjct 110399 GTCCCAG---------AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCC 110349 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | |||||| |||| ||| | ||||||||| | |||||||||||||| ||| Sbjct 110348 CTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCA 110290 Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 ||| |||||||||| ||||||||| ||||| |||| | |||| || | | Sbjct 110289 CCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAG 110230 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 |||| || ||| ||||||||| || |||| ||||||| || |||||||| | Sbjct 110229 CCTCAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACAC 110170 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380 ||| || ||||| | ||| | || ||| ||| |||| ||||| | ||||| | Sbjct 110169 CGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGG 110111 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| ||||||||| |||| ||||||||| | || | |||||| | | || | | Sbjct 110110 TTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTC 110051 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGGCAGGGCGATGCTGGCC 213497 | | | | | ||| ||| ||| | ||||| |||| ||||| |||| Sbjct 110050 TGGAAGTCGTAGACG---CCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCC 109994 Query 213498 AGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557 |||||||| || || ||||| | || | |||||| |||||||| ||||| |||||| Sbjct 109993 AGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTG 109934 Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAG 213617 || ||||||||||| ||||||| ||||| ||| |||||| | |||||||||| Sbjct 109933 GAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAG 109874 Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACC 213675 |||||| | ||| || ||||| ||||| | | || || ||| |||||| | | Sbjct 109873 AGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGAT--GGCATACCAGAGCTTCT 109816 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 |||||| || | || | | | | | |||||||| ||||| | | | Sbjct 109815 GGGCCTT---CATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCT 109759 Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795 ||| || | ||| || | |||| || || || ||| |||||||| ||| Sbjct 109758 CGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCC 109699 Query 213796 AGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 ||||||||| | ||||| || |||| |||||| ||||| || | ||| || ||| ||| Sbjct 109698 AGTCCCCGTTCTTCTCT-ACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAA 109640 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 ||||| | || | ||| ||| || ||| ||||||||||| | ||||| ||| Sbjct 109639 AGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAG 109580 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCC 213971 | || |||||||| ||||| | ||||||||| || || ||||| | | ||||| ||| Sbjct 109579 ACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCC 109520 Query 213972 TGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 ||||| | | | || | || ||||||||| || || | ||| || | ||||| Sbjct 109519 TGGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTT 109464 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA--- 214084 || ||||| || || || ||||| ||||||| ||| | || ||| ||| | Sbjct 109463 CGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCAC---GGATGC-GATGAACGT 109408 Query 214085 -GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 ||| || ||||||||||| |||||||||||||||||| Sbjct 109407 TGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 109368 >seq444 Length=118335 Score = 176 bits (194), Expect = 8e-39 Identities = 353/517 (68%), Gaps = 11/517 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || ||| ||||||||||| Sbjct 61519 CTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTC 61460 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||| ||| ||| || |||| | || || ||| ||||| ||| | ||| | Sbjct 61459 CATAAAGTCGAACGGATTGGAAGACTTGTAGACCT-TGTCATTGCCAAGAGCAACCAAGA 61401 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || |||||| |||| ||||| | ||| ||| || ||||||||| | || | Sbjct 61400 GACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAG 61341 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| ||||| || || ||||||| ||| |||| || || || | | ||| | Sbjct 61340 CGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGT 61281 Query 48078 GCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || ||| || | || ||| ||||| | ||||| | ||||| Sbjct 61280 CCTCAATGACCTGCTTGCTGGGGCGGTTCTTG---AGGTGAGAG---TAGAGGAGGCAGG 61227 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| |||| | || || || || ||||||| ||||||||||| ||||||| Sbjct 61226 CAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAG 61167 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || ||||||||||| || | ||||| | || ||||||||| | Sbjct 61166 GCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 61107 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || ||| | || |||| || | |||| ||| ||||| Sbjct 61106 CCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCGCTGATCC 61047 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | || |||||||| |||||||| |||||| || Sbjct 61046 ACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 61010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520736650240