Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq431 408 8e-109
seq444 176 8e-39
>seq431
Length=114165
Score = 408 bits (452), Expect = 8e-109
Identities = 1065/1600 (67%), Gaps = 82/1600 (5%)
Strand=Plus/Minus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | || |||||||||||| ||||| || ||||||||||| |||||
Sbjct 110914 ACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 110855
Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668
|| || ||| ||||||| | |||||| |||| ||| ||| || | |
Sbjct 110854 AGACCGAGCTT---CCAGCCGGCGAAGTGCAT-GCTGGTGATTTTGCCCA------TGGT 110805
Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728
| |||| | || || || | ||| || ||||| |||||| ||||| | |
Sbjct 110804 CGGGTCCT--TCATG-------TGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACC 110754
Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788
| ||| || ||||| | | || | ||| |||| ||||| || |||||| | |
Sbjct 110753 ACGGTCGGCAGCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAG 110694
Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA- 212847
| |||| || |||| | |||||||||||| | || || || | | | ||
Sbjct 110693 GGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGGATCGAACC---GT-TCTCGGCAA 110638
Query 212848 -GCTGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGT 212904
| ||| | |||| | ||| ||| | ||| || | ||| ||| | ||
Sbjct 110637 TGATGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCC 110578
Query 212905 GAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGT 212964
||||||||| | |||||| ||||| | || || | | |||||| | ||| || ||||
Sbjct 110577 AAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGT 110518
Query 212965 AGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAG 213024
||||||| | || ||||||||| |||| ||||| | ||||| || || |||||||| |
Sbjct 110517 AGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCG 110458
Query 213025 CCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC--CGAAGCTCTGCCCA 213082
| || || ||| ||| | || ||||||| ||| | | | |||| ||||
Sbjct 110457 CGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGT--CCCA 110400
Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142
|||||| || ||| | ||| || ||||||||||| |||| | ||||||
Sbjct 110399 GTCCCAG---------AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCC 110349
Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202
| |||||| |||| ||| | ||||||||| | |||||||||||||| |||
Sbjct 110348 CTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCA 110290
Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261
||| |||||||||| ||||||||| ||||| |||| | |||| || | |
Sbjct 110289 CCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAG 110230
Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321
|||| || ||| ||||||||| || |||| ||||||| || |||||||| |
Sbjct 110229 CCTCAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACAC 110170
Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380
||| || ||||| | ||| | || ||| ||| |||| ||||| | ||||| |
Sbjct 110169 CGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGG 110111
Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440
||| ||||||||| |||| ||||||||| | || | |||||| | | || | |
Sbjct 110110 TTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTC 110051
Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGGCAGGGCGATGCTGGCC 213497
| | | | | ||| ||| ||| | ||||| |||| ||||| ||||
Sbjct 110050 TGGAAGTCGTAGACG---CCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCC 109994
Query 213498 AGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557
|||||||| || || ||||| | || | |||||| |||||||| ||||| ||||||
Sbjct 109993 AGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTG 109934
Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAG 213617
|| ||||||||||| ||||||| ||||| ||| |||||| | ||||||||||
Sbjct 109933 GAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAG 109874
Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACC 213675
|||||| | ||| || ||||| ||||| | | || || ||| |||||| | |
Sbjct 109873 AGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGAT--GGCATACCAGAGCTTCT 109816
Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735
|||||| || | || | | | | | |||||||| ||||| | | |
Sbjct 109815 GGGCCTT---CATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCT 109759
Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795
||| || | ||| || | |||| || || || ||| |||||||| |||
Sbjct 109758 CGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCC 109699
Query 213796 AGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854
||||||||| | ||||| || |||| |||||| ||||| || | ||| || ||| |||
Sbjct 109698 AGTCCCCGTTCTTCTCT-ACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAA 109640
Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914
||||| | || | ||| ||| || ||| ||||||||||| | ||||| |||
Sbjct 109639 AGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAG 109580
Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCC 213971
| || |||||||| ||||| | ||||||||| || || ||||| | | ||||| |||
Sbjct 109579 ACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCC 109520
Query 213972 TGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027
||||| | | | || | || ||||||||| || || | ||| || | |||||
Sbjct 109519 TGGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTT 109464
Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA--- 214084
|| ||||| || || || ||||| ||||||| ||| | || ||| ||| |
Sbjct 109463 CGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCAC---GGATGC-GATGAACGT 109408
Query 214085 -GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123
||| || ||||||||||| ||||||||||||||||||
Sbjct 109407 TGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 109368
>seq444
Length=118335
Score = 176 bits (194), Expect = 8e-39
Identities = 353/517 (68%), Gaps = 11/517 (2%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | |||||||||||||| ||||| || ||| |||||||||||
Sbjct 61519 CTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTC 61460
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957
||| ||| ||| || |||| | || || ||| ||||| ||| | ||| |
Sbjct 61459 CATAAAGTCGAACGGATTGGAAGACTTGTAGACCT-TGTCATTGCCAAGAGCAACCAAGA 61401
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| | || |||||| |||| ||||| | ||| ||| || ||||||||| | || |
Sbjct 61400 GACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAG 61341
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
|||| ||||| || || ||||||| ||| |||| || || || | | ||| |
Sbjct 61340 CGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGT 61281
Query 48078 GCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134
|| || | || ||| || | || ||| ||||| | ||||| | |||||
Sbjct 61280 CCTCAATGACCTGCTTGCTGGGGCGGTTCTTG---AGGTGAGAG---TAGAGGAGGCAGG 61227
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
||||||| |||| | || || || || ||||||| ||||||||||| |||||||
Sbjct 61226 CAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAG 61167
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||| | || | || ||||||||||| || | ||||| | || ||||||||| |
Sbjct 61166 GCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 61107
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314
|||| || || ||||| || ||| | || |||| || | |||| ||| |||||
Sbjct 61106 CCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCGCTGATCC 61047
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
| || |||||||| |||||||| |||||| ||
Sbjct 61046 ACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 61010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931520736650240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |