Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq431 329 6e-85
seq444 156 8e-33
>seq431
Length=114165
Score = 329 bits (364), Expect = 6e-85
Identities = 888/1332 (67%), Gaps = 51/1332 (4%)
Strand=Plus/Minus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA-GACTGCGTCAGGGC 221424
|| ||||||| || |||||| || | | | |||| | ||| ||| || |||||
Sbjct 110332 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 110274
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGA 221483
||||||||||||||||||||||||| ||||||| || || | ||||| ||||| ||
Sbjct 110273 AGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGG-TCGCGAGCCTCAGGAGACTCGA 110215
Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543
||||||| ||||| | | ||| | || || || ||||| || |||| ||| ||||| |
Sbjct 110214 AGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGC 110155
Query 221544 TGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601
||| | | ||||| | ||| | || ||| || || || |||||||||||| |
Sbjct 110154 GGTGACGCATGTTGCTGTTGCGAGC-CTCCTGA-ACAGGGTAGTGGTTGACGTCGAT--G 110099
Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661
||| | |||||| || ||| ||| |||| ||| | || ||| | || |
Sbjct 110098 ATTCT----GTTCAGGTTGCGGAC---AACAACCTGGGTGACCTCGTGGAGCTT---CTG 110049
Query 221662 CAACTCGC---CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718
|| ||| |||| |||| | | || ||||| | | | ||| | ||||||
Sbjct 110048 GAAGTCGTAGACGCCCTCGTTGTAG---TCAACAAAGGTGGGCAAGGCGAGCGAGGCCAG 109992
Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778
||| || || || ||||| || | |||| |||||||| || |||||||||
Sbjct 109991 GTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGA 109932
Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838
|| |||||| || |||| || || || |||||| ||||| || |||||||||||
Sbjct 109931 GCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAG 109872
Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGC 221898
||| || || ||||||||| ||| ||| | || || | |||||| | |||||
Sbjct 109871 CATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCT-TCTGGG 109813
Query 221899 GCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGAGCATG 221953
|| | | ||||| ||||| | ||| || ||| | ||| | || |
Sbjct 109812 CCTT--CATGGTCTTGCG---ACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCT- 109759
Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013
| |||| || ||||| ||| ||||||| || ||| | ||| ||||| ||| ||
Sbjct 109758 -CGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTC 109700
Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073
|||| | ||| | | ||||||| |||||||||||| || ||||| || || | ||
Sbjct 109699 CAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAA 109640
Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133
|| || | || || ||||||| ||||| ||| || | ||||||||| || || ||
Sbjct 109639 AGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAG 109580
Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193
| || |||||||| ||||| || |||| ||| | ||| || || || ||||||||||||
Sbjct 109579 ACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCC 109520
Query 222194 TGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252
|| || | | | ||| | |||||||| || || | || || | ||||| ||
Sbjct 109519 TGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGA 109461
Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG---GCAGACAT 222309
|||||| ||||| ||| || | ||| ||| | | | | || | || |
Sbjct 109460 GGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGA-TGAACGTTGAGA- 109403
Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369
|| || |||||||| || |||||||||||||| ||||||| ||||| ||| ||
Sbjct 109402 -CCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACC 109344
Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429
||| |||||||||||||| | || | || || ||||| |||| ||| | | | ||
Sbjct 109343 CTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGT 109284
Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTA 222489
|| ||||| || || |||||| ||||| || ||| | || |||||||| | |||
Sbjct 109283 ACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTA 109224
Query 222490 CGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACAT 222549
|| || | ||| | | | || ||| || || | |||| | |||| |||
Sbjct 109223 GGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCAT 109164
Query 222550 GTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGA 222607
|| |||||| ||||| || || | |||| ||| ||||| ||| | ||||
Sbjct 109163 GTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TGAGGAGGTATGATCTCTCCAAG 109106
Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGC 222667
|||||||| || || || | | || ||||| | | | | || | ||| | ||| |||
Sbjct 109105 GTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTCAAGC 109046
Query 222668 TCCGACTTGTGC 222679
|| |||||||
Sbjct 109045 TCTTCCTTGTGC 109034
>seq444
Length=118335
Score = 156 bits (172), Expect = 8e-33
Identities = 345/519 (66%), Gaps = 17/519 (3%)
Strand=Plus/Plus
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| ||||| | |||||| ||||| |||||||||||| | | ||| | |
Sbjct 61010 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTCCTCC 61069
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| | | |||| || || ||||| || || || ||||| ||||| ||||||||| | ||
Sbjct 61070 TTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTC 61129
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
|| ||||||||||||||||| || || ||||| || ||| ||| |||||||||
Sbjct 61130 GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAG 61189
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049
|||||| | || ||||||||||||| || ||||||||||| |||||| | |||
Sbjct 61190 CTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTC---TCAC 61246
Query 26050 TTGCTCCACAA--ACCTTCTCAAG-AG---ACCGTCTACAGTATCATCAAAGAGGCTGTG 26103
||| | || || |||| || | | ||| ||| || || |||||
Sbjct 61247 ---CTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATTATTGTC---GATGCTGTC 61300
Query 26104 GAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC 26163
|||||||| ||||||| | | ||||||||| |
Sbjct 61301 AAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCC 61360
Query 26164 AGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACT 26222
| || |||| || |||||||||| || || |||| ||| | || | ||| | |
Sbjct 61361 AACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAAT 61420
Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282
| || |||||| | | || ||||||||||||||||| ||||| || ||| ||
Sbjct 61421 -GACAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGG 61479
Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
||||||||||||||||| ||| | || | |||||| ||
Sbjct 61480 CAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCA 61518
Score = 96.9 bits (106), Expect = 6e-15
Identities = 165/236 (70%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||
Sbjct 60613 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 60672
Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593
||||||| | ||| |||| || | ||| | | || ||| || | || || |
Sbjct 60673 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 60732
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || || || ||||| || || |||||||| || |||| |
Sbjct 60733 CACATCCTCGCCTTCTTCGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGTCGAGCGC 60792
Query 25654 TTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | | || || ||| ||| |||||| || ||||| || ||||| ||
Sbjct 60793 TTCAGCGGCGAGGTCCAG---GTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 60845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928832771459840
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