Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq431 170 2e-37
seq444 109 7e-19
>seq431
Length=114165
Score = 170 bits (188), Expect = 2e-37
Identities = 913/1433 (64%), Gaps = 57/1433 (4%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||||| ||||| | || ||| || || ||| |||| |||
Sbjct 109155 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 109214
Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329
| || || ||| || |||||| || | | |||| ||||| | || || ||||
Sbjct 109215 ATCGAAACCTACAACCTGATGTCG--AGCAAATTCTTCACCCACGCTTCTCCCACACTCT 109272
Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388
|||| |||||||| || || || ||| ||||| ||||||||| ||| || ||||||
Sbjct 109273 TCAACGCTGGTACCCCTCAGGCC-CAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAG 109331
Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGG 75446
||||| || | |||||||| | || || | || | ||||| | ||||| ||| ||
Sbjct 109332 GACTCTATTGAGGGTATCTACGACACCCTCA-AGACT-TGCGCCATGATCTCCAAGATGG 109389
Query 75447 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 75506
| || || ||||| | || | ||| | | |||| || |||| || |
Sbjct 109390 CCGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTATATTGCCGGCA 109449
Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566
| || ||| || | ||| | | || ||||| || || || ||| ||| || ||||
Sbjct 109450 CTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGCTCGCT 109509
Query 75567 ATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622
| || | | || | ||| ||| ||| | |||| ||||| | || || |||
Sbjct 109510 ACGTCGA-CCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGG 109568
Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682
|| |||||| || | || ||| | || | || ||||| || | || |||| |||
Sbjct 109569 CACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGT 109628
Query 75683 TGTAGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740
| || |||||| | | || |||||||| ||||| ||||||||| |||| |||
Sbjct 109629 GCCCGTGA--CCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGA 109686
Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800
|| || | ||| |||| | || || || || || || || ||||| |
Sbjct 109687 AGAACGGGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACG 109746
Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA--AGAGG----AGGGTAGAGCCAATG 75854
| |||||||| || ||| | ||| ||||| || ||| | ||||| | |||
Sbjct 109747 GCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG---CAA-- 109801
Query 75855 CGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913
||| | || | | || | | ||| | || || ||| | | ||||| ||||||||
Sbjct 109802 -GACCAT-GAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGC 109859
Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973
| || | ||||| ||||||||||| ||| ||||| ||||| ||||| | ||
Sbjct 109860 AACCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 109919
Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033
|| ||| ||||| || || |||||||| || | |||||| | ||||||
Sbjct 109920 ACCATCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTC 109979
Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT---CAATGAAGAGACTCGC 76090
|| || ||||| |||| || ||||| | || | | ||| | | | ||| ||
Sbjct 109980 GCGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGACTACAACGAG---GGC 110036
Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150
| || | | || || || || |||| || ||||| | || || ||| ||
Sbjct 110037 GTCTACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGA 110096
Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210
|||| ||| || || || ||| || || || || || ||||| ||| |
Sbjct 110097 ATCATCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGTCACCGC 110156
Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA--- 76267
|| |||||| | ||||| || ||||| || |||| || || | || ||||
Sbjct 110157 CCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATG-----CCTTCCTGGCTCTGCGCATGC 110211
Query 76268 --TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325
|| || || ||| || || | || |||||||| ||||| || ||||
Sbjct 110212 CCTTCGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACG 110271
Query 76326 CATCCCTGGAGGCGAGT-TGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383
| |||| | || ||| | |||| | | | || |||| |||| | ||
Sbjct 110272 CTGCCCT--CACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGA 110329
Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC--AAG 76441
|||||| |||| || || || | || |||| || |||| |||| || || || |
Sbjct 110330 GGGTTCCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGT-GGAATGTCAAGCCCTCGG 110388
Query 76442 CTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501
|| || |||||||| | | | ||||| | |||||| || | ||| | || ||| |
Sbjct 110389 ATC-TCTGGGACTGGGACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCT 110447
Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561
||| | | || || ||||| || || |||| | || |||||||| || || || |||
Sbjct 110448 CTTCTCGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGC 110507
Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTT 76614
||||| || ||||| | |||||||||| | || | || || ||||||||
Sbjct 110508 TTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTT 110560
>seq444
Length=118335
Score = 109 bits (120), Expect = 7e-19
Identities = 151/210 (72%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079
|||||||| | ||||| |||| ||| | ||| ||||| |||||||||| ||
Sbjct 61022 AAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTC---CTCCTTCGCCCAG 61078
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139
||||| |||| || || || ||||||||||||||| ||| | ||| | | ||
Sbjct 61079 CGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 61138
Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199
| ||| | |||||||| ||||| ||||| || || |||||| || || || || ||
Sbjct 61139 TTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCT 61198
Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| ||||||||||||||| || ||||||
Sbjct 61199 CGTGATGAGGGTCTCCACACCGACTTTGCC 61228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596561874423680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |