Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq338 122 3e-22 seq431 96.9 1e-14 seq39 95.1 4e-14 >seq338 Length=188146 Score = 122 bits (134), Expect = 3e-22 Identities = 188/264 (71%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||||||| | || || ||||| ||||| || | Sbjct 19817 CTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCGGTCTTAACAGCAGTATCGATCAA 19758 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | | |||| |||| ||||||||||| | || | || ||| || || | | Sbjct 19757 ACCCTCTCTACCAGCCATGGCATGGAAGAAGAATTC-ACTGGGCGTAAGGCCACGGAGGT 19699 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| |||| ||||| ||||| ||||| || || | ||| |||||| || || || | Sbjct 19698 AGGAGTTCTCGACGAAGCCACGAGCCTCAGGAGAGTAGTCATCCTTGGTGAAATGGGGGA 19639 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | | || ||||| | || |||||||| || || ||| |||||||||| | | Sbjct 19638 GAGTGCGATACTTGAAGCCGAAGGGAATACGCTTACCCTCGACGATCTGCTGTCC--GAC 19581 Query 302822 ACGA--AATCATCTGCGAAATATT 302843 | || | ||||||| ||||| || Sbjct 19580 AAGAGCAGTCATCTGGGAAATGTT 19557 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| ||||||||| Sbjct 20608 AGAATTTCCTTGAGACGAGGGACACCAAGCGTGACGTT---CTTGGACGAAACACCAGCG 20552 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| |||||||| || | || |||| ||||||||||| || || ||||| Sbjct 20551 AAATGGAAGGTATTCAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATA 20492 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||| ||||| || || || Sbjct 20491 ACACCGACCATCTCGCCAGG 20472 >seq431 Length=114165 Score = 96.9 bits (106), Expect = 1e-14 Identities = 435/682 (64%), Gaps = 13/682 (2%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACAGCA 155650 || ||||| || || ||||| ||| | | || ||| ||| || | ||||| ||| Sbjct 109999 GAGGCCAGGTTGCAGACCGCGACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCA 109941 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||||| || || ||||||||| | ||||||||||| || | ||| ||||| Sbjct 109940 GAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 109881 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||| | ||| | || ||||| |||| || || || || |||||| Sbjct 109880 CTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAG 109821 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | |||| || || |||| |||| | ||| || ||| |||| | Sbjct 109820 CTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC 109761 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 | | ||||| ||||| || || ||| |||||||||| | |||||| | || | Sbjct 109760 CTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGT 109701 Query 155891 CCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATA 155947 ||| || || | ||| | || ||| || | || ||| | ||| Sbjct 109700 CCAGTCCCCGTTCTTCTC---TACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAG 109644 Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTC 156007 ||||||||| | || |||||| | |||||| ||||| || || || ||||| || Sbjct 109643 GAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTC 109584 Query 156008 CTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCC 156064 | ||| | || ||||| || || || || ||| ||| | | ||||| Sbjct 109583 GAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCC 109524 Query 156065 ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATT 156124 |||||| || || || |||||||| || |||||||||| ||||| || | | ||| || Sbjct 109523 ACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTT 109464 Query 156125 GGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAG 156184 || || || || || ||| ||||| || || | | || | ||||| | || Sbjct 109463 CGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAG 109404 Query 156185 TCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 ||||| ||||| | |||| || || || ||||| ||| | || | | | |||| Sbjct 109403 ACCAATGCCACC-GGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATAC 109345 Query 156244 CTTCAATAGAATCATCTTCCAT 156265 | |||||||| || || | ||| Sbjct 109344 CCTCAATAGAGTCCTCCTTCAT 109323 >seq39 Length=158756 Score = 95.1 bits (104), Expect = 4e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||||||||| || |||||||| ||||||||||| || Sbjct 50441 GCACCGTGGGCAATCATACAATCACGCTCCATCTCTCCGAAACGCAGACCACCATCACGG 50500 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | ||||||| | ||||| Sbjct 50501 GCACGACCCTCGACGGGCTG 50520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471798063461132