Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq338 122 3e-22
seq431 96.9 1e-14
seq39 95.1 4e-14
>seq338
Length=188146
Score = 122 bits (134), Expect = 3e-22
Identities = 188/264 (71%), Gaps = 6/264 (2%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||||||| | || || ||||| ||||| || |
Sbjct 19817 CTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCGGTCTTAACAGCAGTATCGATCAA 19758
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | | |||| |||| ||||||||||| | || | || ||| || || | |
Sbjct 19757 ACCCTCTCTACCAGCCATGGCATGGAAGAAGAATTC-ACTGGGCGTAAGGCCACGGAGGT 19699
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
||||| |||| ||||| ||||| ||||| || || | ||| |||||| || || || |
Sbjct 19698 AGGAGTTCTCGACGAAGCCACGAGCCTCAGGAGAGTAGTCATCCTTGGTGAAATGGGGGA 19639
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | | || ||||| | || |||||||| || || ||| |||||||||| | |
Sbjct 19638 GAGTGCGATACTTGAAGCCGAAGGGAATACGCTTACCCTCGACGATCTGCTGTCC--GAC 19581
Query 302822 ACGA--AATCATCTGCGAAATATT 302843
| || | ||||||| ||||| ||
Sbjct 19580 AAGAGCAGTCATCTGGGAAATGTT 19557
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| |||||||| |||||||||
Sbjct 20608 AGAATTTCCTTGAGACGAGGGACACCAAGCGTGACGTT---CTTGGACGAAACACCAGCG 20552
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| |||||||| || | || |||| ||||||||||| || || |||||
Sbjct 20551 AAATGGAAGGTATTCAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATA 20492
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||| ||||| || || ||
Sbjct 20491 ACACCGACCATCTCGCCAGG 20472
>seq431
Length=114165
Score = 96.9 bits (106), Expect = 1e-14
Identities = 435/682 (64%), Gaps = 13/682 (2%)
Strand=Plus/Minus
Query 155592 GACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACAGCA 155650
|| ||||| || || ||||| ||| | | || ||| ||| || | ||||| |||
Sbjct 109999 GAGGCCAGGTTGCAGACCGCGACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCA 109941
Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710
||||| || || ||||||||| | ||||||||||| || | ||| |||||
Sbjct 109940 GAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 109881
Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770
|||||| || ||| | ||| | || ||||| |||| || || || || ||||||
Sbjct 109880 CTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAG 109821
Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830
| |||| || || |||| |||| | ||| || ||| |||| |
Sbjct 109820 CTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC 109761
Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890
| | ||||| ||||| || || ||| |||||||||| | |||||| | || |
Sbjct 109760 CTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGT 109701
Query 155891 CCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATA 155947
||| || || | ||| | || ||| || | || ||| | |||
Sbjct 109700 CCAGTCCCCGTTCTTCTC---TACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAG 109644
Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTC 156007
||||||||| | || |||||| | |||||| ||||| || || || ||||| ||
Sbjct 109643 GAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTC 109584
Query 156008 CTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCC 156064
| ||| | || ||||| || || || || ||| ||| | | |||||
Sbjct 109583 GAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCC 109524
Query 156065 ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATT 156124
|||||| || || || |||||||| || |||||||||| ||||| || | | ||| ||
Sbjct 109523 ACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTT 109464
Query 156125 GGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAG 156184
|| || || || || ||| ||||| || || | | || | ||||| | ||
Sbjct 109463 CGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAG 109404
Query 156185 TCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243
||||| ||||| | |||| || || || ||||| ||| | || | | | ||||
Sbjct 109403 ACCAATGCCACC-GGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATAC 109345
Query 156244 CTTCAATAGAATCATCTTCCAT 156265
| |||||||| || || | |||
Sbjct 109344 CCTCAATAGAGTCCTCCTTCAT 109323
>seq39
Length=158756
Score = 95.1 bits (104), Expect = 4e-14
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | ||||||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct 50441 GCACCGTGGGCAATCATACAATCACGCTCCATCTCTCCGAAACGCAGACCACCATCACGG 50500
Query 251545 GCCCTACCCTCGGCAGGCTG 251564
|| | ||||||| | |||||
Sbjct 50501 GCACGACCCTCGACGGGCTG 50520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471798063461132
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |