Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq378 210 3e-48 seq431 183 4e-40 seq276 147 3e-29 seq444 118 1e-20 seq90 113 6e-19 seq369 105 8e-17 >seq378 Length=191291 Score = 210 bits (232), Expect = 3e-48 Identities = 281/391 (72%), Gaps = 6/391 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| | Sbjct 77965 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 78024 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||||||||||||||||| || || |||| ||||| || |||||| || | | Sbjct 78025 CTCACCGAGGCCGACATCCAGCCCCAACTGAATCGCCGCCGTCCCGGCCAGAGCTCCATC 78084 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | || ||||| ||||| ||||| ||| |||| ||| || || || |||| || Sbjct 78085 ACGACCCCGCGAAACGAAAAGGATCGTGTCGTCATTCAGAGCGGTACCGAATTCGGCGTC 78144 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337 || |||||| | || ||||| | | || ||| |||||||| ||| |||| Sbjct 78145 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAACGAGGACCAGCGTCCCAAGGACTAC 78204 Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | ||| |||| || | | || || || || |||||||| | |||||| | | Sbjct 78205 GGCAACTCCACCATGGACATGTTCCCCCGTCCTTCCCACGCCGATTGGACCTACCTCGAG 78264 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||| ||||||||||| || || ||||| ||||| || || |||||||||||| || Sbjct 78265 AAGTATGGCATCAAGGCCTCCTCAGGCGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 78324 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 ||||| |||||||| || |||||||||||| Sbjct 78325 CGCGTTGCCGCCGGTGCCCTCGCCGAGAAAT 78355 Score = 129 bits (142), Expect = 7e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 ||||||||||| |||||||| || || ||||| ||||||| || | | ||||||| Sbjct 78586 GAGGACAGCATTGGCGGCACTGTCACCTGCGTCATTCGCAACCCCCCCTCCGCCCTCGGC 78645 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| ||| Sbjct 78646 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCCCATGCCATGCTCAGCATCCCCGCC 78705 Query 19164 ACCAAGGGATTCGAGATTGGC 19184 |||||||| ||||| || ||| Sbjct 78706 ACCAAGGGCTTCGAAATCGGC 78726 >seq431 Length=114165 Score = 183 bits (202), Expect = 4e-40 Identities = 333/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| ||||||||||| |||| ||||| || Sbjct 109520 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGA 109461 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | |||| ||||| ||| || | || || | || Sbjct 109460 GGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACC 109401 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| |||||| ||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct 109400 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTC 109341 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || | || | || || Sbjct 109340 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 109281 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| || | | |||||| || |||||| Sbjct 109280 AGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 109221 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||||| || || || || | |||||| Sbjct 109220 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCGAC 109176 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| | |||| | | |||| | |||| ||||| || Sbjct 109175 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGA 109116 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || |||| ||| ||| || || || || |||||||| | | |||||| Sbjct 109115 TCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 109056 Query 1630545 GGCGTCGAG 1630553 | ||| || Sbjct 109055 AGAGTCAAG 109047 Score = 100 bits (110), Expect = 3e-15 Identities = 319/501 (64%), Gaps = 2/501 (0%) Strand=Plus/Minus Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160 ||||| |||||| ||| | || |||||||| ||| || || |||| | Sbjct 110020 ACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAG 109961 Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTT 1628219 ||| || |||||| ||||| ||||||| | | | | || || ||||||| |||||| Sbjct 109960 TACTCGATGATCTCCGTGCAGAGGTTGGA-GCTGCGGATGGTGCCAAGGTTCTTCTGGTT 109902 Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279 | | | ||||| |||| ||||||| ||||||| | || ||| |||||| |||| || Sbjct 109901 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGC 109842 Query 1628280 CGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNN 1628339 | ||| |||||| |||||| || | || || | | || | |||| Sbjct 109841 CTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTG 109782 Query 1628340 NNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGC 1628399 || || || |||||||||| ||| |||||| || Sbjct 109781 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 109722 Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459 |||| || || | ||| | |||||| || || | | | ||| |||||||| Sbjct 109721 CTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTC 109662 Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519 |||| || ||| || ||||| || || || ||||||||||||||||||||| Sbjct 109661 GGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTT 109602 Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579 || || | |||||| | ||||||||||| ||||| |||||| ||| || || Sbjct 109601 GCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGC 109542 Query 1628580 GCCCTTGCGCTTGCCGCCGCC 1628600 ||| ||| ||| ||| || Sbjct 109541 ACCCGGGCGTTTGTTGCCACC 109521 Score = 93.3 bits (102), Expect = 5e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || || || || | || || || ||| |||||||||| |||| | Sbjct 110574 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 110515 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 ||| | |||| ||||||||| ||||||||| || | || || |||||| |||| | Sbjct 110514 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 110455 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512 |||| || |||||||| | |||||||| | || || || | || |||||||||||| Sbjct 110454 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAAAGCGTCCCAGTCC 110396 Query 1627513 CAG 1627515 ||| Sbjct 110395 CAG 110393 >seq276 Length=420336 Score = 147 bits (162), Expect = 3e-29 Identities = 98/109 (90%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||||||||||||||| || |||||| | || |||||| | || |||||| Sbjct 356308 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTCGGTTGCAAGACCGTCGCCAAC 356367 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 356368 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACCTTCAACATCA 356416 >seq444 Length=118335 Score = 118 bits (130), Expect = 1e-20 Identities = 229/327 (70%), Gaps = 17/327 (5%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| | || ||||| Sbjct 61524 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATG 61465 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | |||||| |||| | ||||||| ||| || || |||| || Sbjct 61464 TTCTCCATAAAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATTGCCAAGAGCAAC- 61406 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || || ||||| ||||| ||||| |||||||| ||| ||| || ||||||||||| Sbjct 61405 CAAG-AGACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGA 61347 Query 868869 --TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 |||||| | ||||| | |||| ||| ||||| | |||||||| ||| || ||||| Sbjct 61346 GCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGAC 61289 Query 868927 GATGATCTGCCT---GGGCACGTCGGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCA 868982 || || | ||| | | | || | || | || |||| | | | |||||| | Sbjct 61288 AATAATGT-CCTCAATGACCTGCTTGCTGGGGCGGTTCTTGAGGTG---AGAGTAGAGGA 61233 Query 868983 GGCAGGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||||||||| ||| | ||||| Sbjct 61232 GGCAGGCAAAGTCGGTGTGGAGACCCT 61206 Score = 113 bits (124), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| || || ||||| || || ||||| Sbjct 61210 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTT 61151 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| || ||| ||||| |||||||||||||| || Sbjct 61150 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAA 61091 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356 | | | ||| |||| ||| ||| |||| | ||| | | |||||||||||| ||| Sbjct 61090 GGCAACGAGGCGCTGGGCGAAG-----GAGGACTTCTCGTCGCTGATCCACTTCAGAGCC 61036 Query 869357 CAGTCGGCCTTTTT 869370 ||||||||||| || Sbjct 61035 CAGTCGGCCTTCTT 61022 >seq90 Length=626743 Score = 113 bits (124), Expect = 6e-19 Identities = 254/373 (68%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||| ||||||| | |||||||| || || |||| | | | ||||||||||||||||||| Sbjct 266142 GGCAGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 266200 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||| ||||| | |||| |||||| |||| Sbjct 266201 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCACGGTGGAGCTGGGACTCGGTGGTGC 266260 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGA 1726867 | ||||| | |||||| | | | ||| || || | |||| ||| || Sbjct 266261 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCAAGGAACTGCGGGG-----AGATGGT 266315 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926 | ||| | |||| ||| | |||| || | ||||| || || ||||| || || | Sbjct 266316 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 266372 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||||| || |||||| || Sbjct 266373 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATATCCGGGTCGTTGAT 266432 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 ||||||||||| |||||||| || || ||||| |||| ||||||||||||| ||||| Sbjct 266433 GAGGCCCTTCCAGCCGACGGTGGTACGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 266492 Query 1727047 AAGCGCGTCGCCG 1727059 || ||||||| Sbjct 266493 GAG---GTCGCCG 266502 >seq369 Length=515494 Score = 105 bits (116), Expect = 8e-17 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| || || |||||| |||| |||| | || |||||| | | Sbjct 400939 TCGACGTCGTCCGTAACCGCATCAAAGGTTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 400998 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | | || ||||||||||||||| || | || || | |||||||| | Sbjct 400999 GCCGCCACAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAG 401058 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||| | || |||||||||||||||| ||| | || |||||| Sbjct 401059 CTCTCCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 401118 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCG 1574236 ||| | | |||||||| | || | |||||| |||||||| || || Sbjct 401119 AGTCCAACAAGATCATCGAGCCGCTGC--AGTCGCGATGCGCCATCCTCCG 401167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107054180988412