Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq378 210 3e-48
seq431 183 4e-40
seq276 147 3e-29
seq444 118 1e-20
seq90 113 6e-19
seq369 105 8e-17
>seq378
Length=191291
Score = 210 bits (232), Expect = 3e-48
Identities = 281/391 (72%), Gaps = 6/391 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| |
Sbjct 77965 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 78024
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||||||||||||||||| || || |||| ||||| || |||||| || | |
Sbjct 78025 CTCACCGAGGCCGACATCCAGCCCCAACTGAATCGCCGCCGTCCCGGCCAGAGCTCCATC 78084
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| || ||||| ||||| ||||| ||| |||| ||| || || || |||| ||
Sbjct 78085 ACGACCCCGCGAAACGAAAAGGATCGTGTCGTCATTCAGAGCGGTACCGAATTCGGCGTC 78144
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337
|| |||||| | || ||||| | | || ||| |||||||| ||| ||||
Sbjct 78145 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAACGAGGACCAGCGTCCCAAGGACTAC 78204
Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| ||| |||| || | | || || || || |||||||| | |||||| | |
Sbjct 78205 GGCAACTCCACCATGGACATGTTCCCCCGTCCTTCCCACGCCGATTGGACCTACCTCGAG 78264
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||| ||||||||||| || || ||||| ||||| || || |||||||||||| ||
Sbjct 78265 AAGTATGGCATCAAGGCCTCCTCAGGCGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 78324
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484
||||| |||||||| || ||||||||||||
Sbjct 78325 CGCGTTGCCGCCGGTGCCCTCGCCGAGAAAT 78355
Score = 129 bits (142), Expect = 7e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
||||||||||| |||||||| || || ||||| ||||||| || | | |||||||
Sbjct 78586 GAGGACAGCATTGGCGGCACTGTCACCTGCGTCATTCGCAACCCCCCCTCCGCCCTCGGC 78645
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| |||
Sbjct 78646 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCCCATGCCATGCTCAGCATCCCCGCC 78705
Query 19164 ACCAAGGGATTCGAGATTGGC 19184
|||||||| ||||| || |||
Sbjct 78706 ACCAAGGGCTTCGAAATCGGC 78726
>seq431
Length=114165
Score = 183 bits (202), Expect = 4e-40
Identities = 333/489 (68%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| ||||| ||||||||||| |||| ||||| ||
Sbjct 109520 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGA 109461
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | |||| ||||| ||| || | || || | ||
Sbjct 109460 GGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACC 109401
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| |||||| ||||||||| | ||||| ||||| ||||||||||| |||||
Sbjct 109400 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTC 109341
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || | || | || ||
Sbjct 109340 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 109281
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || |||||| || | | |||||| || ||||||
Sbjct 109280 AGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 109221
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||||| || || || || | ||||||
Sbjct 109220 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCGAC 109176
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| | |||| | | |||| | |||| ||||| ||
Sbjct 109175 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGA 109116
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || |||| ||| ||| || || || || |||||||| | | ||||||
Sbjct 109115 TCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 109056
Query 1630545 GGCGTCGAG 1630553
| ||| ||
Sbjct 109055 AGAGTCAAG 109047
Score = 100 bits (110), Expect = 3e-15
Identities = 319/501 (64%), Gaps = 2/501 (0%)
Strand=Plus/Minus
Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160
||||| |||||| ||| | || |||||||| ||| || || |||| |
Sbjct 110020 ACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAG 109961
Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTT 1628219
||| || |||||| ||||| ||||||| | | | | || || ||||||| ||||||
Sbjct 109960 TACTCGATGATCTCCGTGCAGAGGTTGGA-GCTGCGGATGGTGCCAAGGTTCTTCTGGTT 109902
Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279
| | | ||||| |||| ||||||| ||||||| | || ||| |||||| |||| ||
Sbjct 109901 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGC 109842
Query 1628280 CGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNN 1628339
| ||| |||||| |||||| || | || || | | || | ||||
Sbjct 109841 CTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTG 109782
Query 1628340 NNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGC 1628399
|| || || |||||||||| ||| |||||| ||
Sbjct 109781 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 109722
Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459
|||| || || | ||| | |||||| || || | | | ||| ||||||||
Sbjct 109721 CTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTC 109662
Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519
|||| || ||| || ||||| || || || |||||||||||||||||||||
Sbjct 109661 GGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTT 109602
Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579
|| || | |||||| | ||||||||||| ||||| |||||| ||| || ||
Sbjct 109601 GCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGC 109542
Query 1628580 GCCCTTGCGCTTGCCGCCGCC 1628600
||| ||| ||| ||| ||
Sbjct 109541 ACCCGGGCGTTTGTTGCCACC 109521
Score = 93.3 bits (102), Expect = 5e-13
Identities = 132/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393
||||||| || || || || | || || || ||| |||||||||| |||| |
Sbjct 110574 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 110515
Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453
||| | |||| ||||||||| ||||||||| || | || || |||||| |||| |
Sbjct 110514 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 110455
Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512
|||| || |||||||| | |||||||| | || || || | || ||||||||||||
Sbjct 110454 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAAAGCGTCCCAGTCC 110396
Query 1627513 CAG 1627515
|||
Sbjct 110395 CAG 110393
>seq276
Length=420336
Score = 147 bits (162), Expect = 3e-29
Identities = 98/109 (90%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||||||||||||||| || |||||| | || |||||| | || ||||||
Sbjct 356308 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTCGGTTGCAAGACCGTCGCCAAC 356367
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 356368 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACCTTCAACATCA 356416
>seq444
Length=118335
Score = 118 bits (130), Expect = 1e-20
Identities = 229/327 (70%), Gaps = 17/327 (5%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| ||| || |||||||||||||| | || |||||
Sbjct 61524 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATG 61465
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | |||||| |||| | ||||||| ||| || || |||| ||
Sbjct 61464 TTCTCCATAAAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATTGCCAAGAGCAAC- 61406
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| || || ||||| ||||| ||||| |||||||| ||| ||| || |||||||||||
Sbjct 61405 CAAG-AGACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGA 61347
Query 868869 --TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926
|||||| | ||||| | |||| ||| ||||| | |||||||| ||| || |||||
Sbjct 61346 GCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGAC 61289
Query 868927 GATGATCTGCCT---GGGCACGTCGGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCA 868982
|| || | ||| | | | || | || | || |||| | | | |||||| |
Sbjct 61288 AATAATGT-CCTCAATGACCTGCTTGCTGGGGCGGTTCTTGAGGTG---AGAGTAGAGGA 61233
Query 868983 GGCAGGCAAAGTCGCAGTGCA-ACCCT 869008
|||||||||||||| ||| | |||||
Sbjct 61232 GGCAGGCAAAGTCGGTGTGGAGACCCT 61206
Score = 113 bits (124), Expect = 6e-19
Identities = 142/194 (73%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||| | |||||| |||| || || ||||| || || |||||
Sbjct 61210 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTT 61151
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||||| | ||| || ||| ||||| |||||||||||||| ||
Sbjct 61150 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAA 61091
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356
| | | ||| |||| ||| ||| |||| | ||| | | |||||||||||| |||
Sbjct 61090 GGCAACGAGGCGCTGGGCGAAG-----GAGGACTTCTCGTCGCTGATCCACTTCAGAGCC 61036
Query 869357 CAGTCGGCCTTTTT 869370
||||||||||| ||
Sbjct 61035 CAGTCGGCCTTCTT 61022
>seq90
Length=626743
Score = 113 bits (124), Expect = 6e-19
Identities = 254/373 (68%), Gaps = 18/373 (5%)
Strand=Plus/Plus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||| ||||||| | |||||||| || || |||| | | | |||||||||||||||||||
Sbjct 266142 GGCAGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 266200
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||| ||||| | |||| |||||| ||||
Sbjct 266201 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCACGGTGGAGCTGGGACTCGGTGGTGC 266260
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGA 1726867
| ||||| | |||||| | | | ||| || || | |||| ||| ||
Sbjct 266261 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCAAGGAACTGCGGGG-----AGATGGT 266315
Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926
| ||| | |||| ||| | |||| || | ||||| || || ||||| || || |
Sbjct 266316 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 266372
Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986
||| || |||||| | | | | | | ||||| || |||||| ||
Sbjct 266373 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATATCCGGGTCGTTGAT 266432
Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046
||||||||||| |||||||| || || ||||| |||| ||||||||||||| |||||
Sbjct 266433 GAGGCCCTTCCAGCCGACGGTGGTACGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 266492
Query 1727047 AAGCGCGTCGCCG 1727059
|| |||||||
Sbjct 266493 GAG---GTCGCCG 266502
>seq369
Length=515494
Score = 105 bits (116), Expect = 8e-17
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| || || |||||| |||| |||| | || |||||| | |
Sbjct 400939 TCGACGTCGTCCGTAACCGCATCAAAGGTTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 400998
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| ||||||||| | | || ||||||||||||||| || | || || | |||||||| |
Sbjct 400999 GCCGCCACAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAG 401058
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
| || || || ||||| | || |||||||||||||||| ||| | || ||||||
Sbjct 401059 CTCTCCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 401118
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCG 1574236
||| | | |||||||| | || | |||||| |||||||| || ||
Sbjct 401119 AGTCCAACAAGATCATCGAGCCGCTGC--AGTCGCGATGCGCCATCCTCCG 401167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107054180988412
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