Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq276 152 8e-31
seq369 131 3e-24
seq431 129 9e-24
seq444 107 3e-17
seq20 86.0 1e-10
>seq276
Length=420336
Score = 152 bits (168), Expect = 8e-31
Identities = 99/109 (91%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||||||||||||||||||||||||| | || ||||||||||| ||||||
Sbjct 356308 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTCGGTTGCAAGACCGTCGCCAAC 356367
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 356368 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACCTTCAACATCA 356416
>seq369
Length=515494
Score = 131 bits (144), Expect = 3e-24
Identities = 207/295 (70%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204
|||||||| |||| |||||| | ||| | | ||||| || |||||| | |
Sbjct 400941 GACGTCGTCCGTAACCGCATCAAAGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 400998
Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264
||||||||||| | | || ||||| ||||||||| || | || || | |||||||| |
Sbjct 400999 GCCGCCACAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAG 401058
Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324
| ||||| || ||||| | ||| ||||||||||||| || || | |||||||||
Sbjct 401059 CTCTCCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 401118
Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384
||| | | ||||||| | || ||| || ||||||||| | || | || || |
Sbjct 401119 AGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTCCGGTACGCCCGGC 401178
Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439
||||||||| ||| | | | ||| |||| |||| ||||| || || |||||
Sbjct 401179 TCACCGACGAGCAGGTGGTCAAGCGGCTGCTGCAGATCATCGAAGCGGAGAAGGT 401233
>seq431
Length=114165
Score = 129 bits (142), Expect = 9e-24
Identities = 332/504 (66%), Gaps = 19/504 (4%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| ||||| || |||| ||| ||||| ||||||||||| || | ||||| ||
Sbjct 109520 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGA 109461
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| ||||| || | |||| ||| | ||| || | || || | ||
Sbjct 109460 GGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACC 109401
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| |||||| ||||||||| | ||||| | || || || |||||||| |||||
Sbjct 109400 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTC 109341
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| ||||| |||||||||| | || ||||| || || || | | | || ||
Sbjct 109340 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 109281
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTG--GGACATGGCCTCGTAG 2073837
|| |||||||| ||||| | || ||| | || | ||| ||||| | ||||
Sbjct 109280 AGCGTTGAAGAGTGTGGGAGAAGCGTGGGTG-AAGAAT-TTGCTCGACATCAGGTTGTAG 109223
Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897
|| ||| |||||| | |||||| || || || || | ||||
Sbjct 109222 GTTTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCG 109178
Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957
|| ||||||||||||| |||||||| |||| | | | || | |||| |||||
Sbjct 109177 ACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTAT 109118
Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017
|| | || |||| | ||| || || |||| | |||||| || | | ||||
Sbjct 109117 GATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATG 109058
Query 2074018 GCGGCGTCGAGGGCCTCCTTGTGC 2074041
|| | ||| || | |||||||||
Sbjct 109057 GCAGAGTCAAGCTCTTCCTTGTGC 109034
Score = 100 bits (110), Expect = 5e-15
Identities = 288/444 (65%), Gaps = 10/444 (2%)
Strand=Plus/Minus
Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631
||| || || ||| ||||| ||||||| | || ||||||| ||||||| ||||||
Sbjct 109959 ACTCGATGATCTCCGTGCAGAGGTTGGAG--CTGCGGATGGTGCCAAGGTTCTTCTGGTT 109902
Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691
||| | ||||| |||| ||||||| |||||| | || || |||||| |||| ||
Sbjct 109901 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGC 109842
Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCT-CGCGCG--GCCCTN 2071748
| || |||||| |||| | | | || || |||| | || | ||||
Sbjct 109841 CTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCAT---GGTCTTGCGACCCTTGCCCAT 109785
Query 2071749 NNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGG 2071808
| | ||| || || | |||||| ||| ||| |||||| ||
Sbjct 109784 CTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG 109725
Query 2071809 CGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAG 2071868
|||| ||||| | ||| | |||||| ||| || | || | ||| || ||
Sbjct 109724 GCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAG 109665
Query 2071869 GTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 2071928
|||| |||| || || || || || || || || ||||||||||||||||||
Sbjct 109664 GTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTT 109605
Query 2071929 CTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 2071988
||| ||| || | |||||| || ||||||||||| ||||| |||||| ||| ||
Sbjct 109604 CTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAA 109545
Query 2071989 GGCGCCCTTGCGCTTGCCGCCGCC 2072012
|| ||| ||| ||| ||| ||
Sbjct 109544 AGCACCCGGGCGTTTGTTGCCACC 109521
Score = 86.0 bits (94), Expect = 1e-10
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662
||||||| || || || || | || || || ||| |||||||||| ||| |
Sbjct 110574 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 110515
Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722
||| | |||| ||||||||| ||||||||| || | || || |||||| |||| |
Sbjct 110514 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 110455
Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782
|||| || |||||||| | |||| ||| | | || || || |||||||||||||
Sbjct 110454 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCC 110395
Query 2069783 AG 2069784
||
Sbjct 110394 AG 110393
>seq444
Length=118335
Score = 107 bits (118), Expect = 3e-17
Identities = 165/230 (72%), Gaps = 8/230 (3%)
Strand=Plus/Minus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| ||| | || ||| ||| || |||||||||||||| | || ||||| ||||||
Sbjct 61515 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATA 61456
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025
| |||||| |||| | | |||| ||| || || |||| || |||| || |
Sbjct 61455 AAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATTGCCAAGAGCAAC-CAAG-AGAC 61398
Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGA--TGAGCGC 794083
|||| |||||||| ||||||||||| ||| ||| || ||||||||||| ||||||
Sbjct 61397 GGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGC 61338
Query 794084 CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGA 794133
| ||||| | |||| | | ||||| | |||||||| ||| || ||||
Sbjct 61337 AA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGA 61290
Score = 100 bits (110), Expect = 5e-15
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643
|| ||||||| ||||||||||||||| | |||||||||||||||||||||||| || ||
Sbjct 60908 GGCTCCTTGATGTAGGTGTCGATGAGCAACGAGTAGGTCTCTGAGTGGATGTTCTCCATC 60849
Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666
||| ||||||||||| |||||
Sbjct 60848 ATGATTTGGAAGCCATAGAAGCA 60826
Score = 95.1 bits (104), Expect = 2e-13
Identities = 138/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| || || ||| ||| | |||||| ||| || || ||||| || || |||||
Sbjct 61210 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTT 61151
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||||| ||| || ||| ||||| |||||||||||||| ||
Sbjct 61150 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAA 61091
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517
| | ||||| |||| ||| || | ||| | ||| | | |||||||||||| |||
Sbjct 61090 GGCAACGAGGCGCTGGGCGAAGG-----AGGACTTCTCGTCGCTGATCCACTTCAGAGCC 61036
Query 794518 CACTCTGCCTTTTT 794531
|| || ||||| ||
Sbjct 61035 CAGTCGGCCTTCTT 61022
>seq20
Length=283381
Score = 86.0 bits (94), Expect = 1e-10
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| || || |||||||||||| ||||||| || ||| |||
Sbjct 18553 GTACTTGGTGACGGCCTTGGTGCCTTCCGAGACGGCGTGCTTGGCCAGCTCACCGGGCAG 18494
Query 1485531 GATCAGGCGCAC 1485542
||| ||||| ||
Sbjct 18493 GATGAGGCGAAC 18482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916136195954804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |