Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq456 138 7e-28
seq154 111 1e-19
seq120 111 1e-19
>seq456
Length=89672
Score = 138 bits (152), Expect = 7e-28
Identities = 164/220 (75%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||||| || ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 20941 CAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 20882
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||| ||||||||||| || |||||||| | || | |||||||||||
Sbjct 20881 CTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 20822
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| || | ||| || |||| ||| |
Sbjct 20821 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGA 20766
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
| ||||| |||||||||||||| || ||||||||||||||
Sbjct 20765 TAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 20726
>seq154
Length=370784
Score = 111 bits (122), Expect = 1e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || ||| |||| | || || || ||||| ||||||||||
Sbjct 211229 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 211170
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || |||||||| | || | ||||||||||| | || || |||||
Sbjct 211169 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 211110
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || |
Sbjct 211109 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 211050
Query 34968 A 34968
|
Sbjct 211049 A 211049
>seq120
Length=409222
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|||||||||||||| ||||| || ||| |||| | || || || ||||| || ||||||
Sbjct 293949 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 294008
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
|||| || |||||||| | || | |||||||| || | || || ||||||
Sbjct 294009 ATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTGACGTTG 294068
Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966
| || | || | ||||| |||| ||| || ||||| || ||||||||||| ||
Sbjct 294069 TCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACG 294128
Query 34967 AAGATCTGCAT 34977
|||||||||||
Sbjct 294129 AAGATCTGCAT 294139
Score = 102 bits (112), Expect = 5e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | ||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 294155 CAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 294214
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || |||||||||| || |||||||| | || | |||||||||||
Sbjct 294215 CTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 294274
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| | || | || || |||||| |||| ||| |||||
Sbjct 294275 CTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGT 294334
Query 34945 CTTTCCCGTGAGGGTCTTTAC 34965
||| || || || ||||| ||
Sbjct 294335 CTTGCCGGTAAGCGTCTTGAC 294355
Score = 100 bits (110), Expect = 2e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| ||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 294440 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 294499
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||||| || |||||||| | || | |||||||||||
Sbjct 294500 TCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 294559
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | || || |||||| |||| ||| ||||||
Sbjct 294560 TGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTC 294619
Query 34946 TTTCCCGTGA 34955
|| || ||||
Sbjct 294620 TTGCCGGTGA 294629
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||||| || ||||||||| ||||| ||||| | | |||| ||||
Sbjct 293700 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCC 293759
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || ||||| || || || ||||| || | || | |||||||||||
Sbjct 293760 TCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 293819
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | |||| || | |||||| || | || || |||
Sbjct 293820 TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTC 293879
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| || |||||||||||
Sbjct 293880 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325688687721284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |