Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq431 306 4e-78
seq456 118 1e-21
seq444 116 4e-21
seq154 105 6e-18
seq120 102 8e-17
>seq431
Length=114165
Score = 306 bits (338), Expect = 4e-78
Identities = 1008/1545 (65%), Gaps = 53/1545 (3%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || ||||| ||||| || || || || || ||| | || | |||| || | ||
Sbjct 110572 TTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 110513
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| ||
Sbjct 110512 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACG 110453
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
|| || |||||||| | |||| | | || || | ||||| ||| |||||||||||
Sbjct 110452 AGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAG 110393
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCT 148498
|| ||| || | || ||||||||||||||||| || ||||| | | || |||||
Sbjct 110392 AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCC-CTGAGAGACGGGGGA 110334
Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCG 148557
|||||||||| ||| || || | | || ||||| | ||| | | ||| |
Sbjct 110333 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGG 110275
Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTC---GCTT 148613
| ||| ||| || ||||| || | | |||| || | ||| | |||
Sbjct 110274 CAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAG----GTCGCGAGCCTCAGGAGAC 110219
Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673
||| | ||||| ||||| || || || || ||||| ||||| || || | ||||||
Sbjct 110218 TCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATG 110159
Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGAT 148732
|| ||||| |||||| | ||| || ||| || | || ||||||||| ||||||
Sbjct 110158 GGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGAT 110100
Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792
||| ||| || ||||| || || |||| || | | | ||| | || |||||
Sbjct 110099 GATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 110040
Query 148793 ---------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACAC 148843
|||| || || | | | || || ||||| ||||| || ||||| ||
Sbjct 110039 GACGCCCTCGTTGTAGTCAACAAAG-GTGGG--CAAGGCGAGCGAGGCCAGGTTGCAGAC 109983
Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGAT 148903
|| |||||| || |||| |||||| | |||||| | ||| || ||| || |||
Sbjct 109982 CGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGAT 109923
Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
||| | |||||| || |||||||||| |||| || |||||||| |||||| | ||
Sbjct 109922 GGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGG 109863
Query 148964 TCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACT 149021
|||||| || ||| | || | ||| | | | || | ||| || ||
Sbjct 109862 GTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGGGC-----CT 109810
Query 149022 TGCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACG 149073
| || || | |||||||| ||||||||| | ||| | || |||||||
Sbjct 109809 TCATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCGAACT 109753
Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133
||||||||||||| ||| | || || ||||||| || ||||||||||| | ||| | |
Sbjct 109752 CCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCC 109693
Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193
||| | | || | |||||| || || ||||| | |||||| ||| | ||||| |
Sbjct 109692 CGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCAC 109633
Query 149194 GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCG 149253
| || || || ||| ||| |||||| | | | | ||| | || |
Sbjct 109632 GGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGG 109573
Query 149254 CGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG---CTTGCCGCCCTGGTCGA 149310
||||||| ||||||| ||| | |||| || ||| ||| ||||| ||||||||||
Sbjct 109572 CGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGA 109513
Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370
||| ||| | ||||||| || || || | ||| || | | || | | || ||||
Sbjct 109512 CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGT 109453
Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430
|||| | ||| |||| || || | || ||||||| || ||||| |
Sbjct 109452 TAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCAC 109393
Query 149431 CGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489
|| | ||| ||||| |||| |||| ||| || |||||| ||||| || |
Sbjct 109392 CGGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCGTAGATACCCTCAATAGAG 109334
Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549
|| ||||||| | || ||||| ||| ||| || | | | || || || |
Sbjct 109333 TCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTG 109274
Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGGCTCATCATCTCGTACGACTCGAG 149608
|| | ||||| ||||| || || |||| || | ||||| | ||| | ||||
Sbjct 109273 AAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCG-ACATCAGGTTGTAGGTTTCGAT 109215
Query 149609 CACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGG 149668
||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| ||
Sbjct 109214 GACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGG 109155
Query 149669 TCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCC 149728
|| ||| || | ||| ||| ||||| | ||| | || | |||||| ||||
Sbjct 109154 TCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCC 109095
Query 149729 AAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
|| || | ||||| ||||||||| | | | | ||||| | |||
Sbjct 109094 GAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 109050
>seq456
Length=89672
Score = 118 bits (130), Expect = 1e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || ||||| ||| | ||| ||||||||||||||| ||
Sbjct 20925 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 20866
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || || ||||||||||| || |||||||| |||||||| |||||| ||||
Sbjct 20865 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 20806
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||||| | |||||| || | ||||| || || || || || ||
Sbjct 20805 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 20746
Query 133644 TTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 20745 TTGACGAAGATCTGCATG 20728
>seq444
Length=118335
Score = 116 bits (128), Expect = 4e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| |||||||| ||||| || ||||| || || || || ||||||||| || |||
Sbjct 61233 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 61174
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
|| || ||||| | || | |||||| |||| |||| ||| ||| || |||
Sbjct 61173 AGACCAGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 61114
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819
|| | ||||| ||| ||| ||||| || | ||||| ||| || | | | ||| | |
Sbjct 61113 AAGATACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCG 61054
Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
||||||||||| ||||| |||||||| ||||| | ||| ||
Sbjct 61053 CTGATCCACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 61010
>seq154
Length=370784
Score = 105 bits (116), Expect = 6e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||||||||||||||| ||| | || | |||||||||||||| || ||||| |||||
Sbjct 211195 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTT 211136
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | |||||| | || ||| || || | ||| |
Sbjct 211135 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 211076
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652
||| || || ||||| || || ||||||
Sbjct 211075 GGTCTTACCCGTCAGGGTCTTCACGAAA 211048
>seq120
Length=409222
Score = 102 bits (112), Expect = 8e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||| ||||| || ||||| ||| || ||| |||||| |||
Sbjct 294162 AAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 294221
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| | || | |||||||||||||| || ||||| |||||||| |||
Sbjct 294222 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATC 294281
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | || |||| || ||| || || | ||||| ||| ||||||
Sbjct 294282 TTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 294341
Query 133635 GTCAGAGTTTTTACGA 133650
|| || || || ||||
Sbjct 294342 GTAAGCGTCTTGACGA 294357
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| || || ||||| || ||||| ||| || ||| |||||| |||||||||||
Sbjct 293943 GTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 294002
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | |||||||||||||| ||||| || ||||| || ||||| ||||
Sbjct 294003 GCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTG 294062
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||| | | || || || | ||| | || ||||| || || ||
Sbjct 294063 ACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTC 294122
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 294123 TTAACGAAGATCTGCAT 294139
Score = 89.7 bits (98), Expect = 5e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||| ||||| || ||||| ||| || ||| |||||| |||
Sbjct 294446 AAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 294505
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| | || | |||||||||||||| || ||||| |||||||| |||
Sbjct 294506 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATC 294565
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | || |||| || ||| || || | ||| | ||| ||||||
Sbjct 294566 TTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTGCCG 294625
Query 133635 GT 133636
||
Sbjct 294626 GT 294627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483414539700640
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