Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq431 306 4e-78 seq456 118 1e-21 seq444 116 4e-21 seq154 105 6e-18 seq120 102 8e-17 >seq431 Length=114165 Score = 306 bits (338), Expect = 4e-78 Identities = 1008/1545 (65%), Gaps = 53/1545 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| ||||| || || || || || ||| | || | |||| || | || Sbjct 110572 TTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 110513 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| || Sbjct 110512 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACG 110453 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 || || |||||||| | |||| | | || || | ||||| ||| ||||||||||| Sbjct 110452 AGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAG 110393 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCT 148498 || ||| || | || ||||||||||||||||| || ||||| | | || ||||| Sbjct 110392 AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCC-CTGAGAGACGGGGGA 110334 Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCG 148557 |||||||||| ||| || || | | || ||||| | ||| | | ||| | Sbjct 110333 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGG 110275 Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTC---GCTT 148613 | ||| ||| || ||||| || | | |||| || | ||| | ||| Sbjct 110274 CAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAG----GTCGCGAGCCTCAGGAGAC 110219 Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673 ||| | ||||| ||||| || || || || ||||| ||||| || || | |||||| Sbjct 110218 TCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATG 110159 Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGAT 148732 || ||||| |||||| | ||| || ||| || | || ||||||||| |||||| Sbjct 110158 GGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGAT 110100 Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792 ||| ||| || ||||| || || |||| || | | | ||| | || ||||| Sbjct 110099 GATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 110040 Query 148793 ---------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACAC 148843 |||| || || | | | || || ||||| ||||| || ||||| || Sbjct 110039 GACGCCCTCGTTGTAGTCAACAAAG-GTGGG--CAAGGCGAGCGAGGCCAGGTTGCAGAC 109983 Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGAT 148903 || |||||| || |||| |||||| | |||||| | ||| || ||| || ||| Sbjct 109982 CGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGAT 109923 Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||| | |||||| || |||||||||| |||| || |||||||| |||||| | || Sbjct 109922 GGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGG 109863 Query 148964 TCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACT 149021 |||||| || ||| | || | ||| | | | || | ||| || || Sbjct 109862 GTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGGGC-----CT 109810 Query 149022 TGCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACG 149073 | || || | |||||||| ||||||||| | ||| | || ||||||| Sbjct 109809 TCATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCGAACT 109753 Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133 ||||||||||||| ||| | || || ||||||| || ||||||||||| | ||| | | Sbjct 109752 CCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCC 109693 Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193 ||| | | || | |||||| || || ||||| | |||||| ||| | ||||| | Sbjct 109692 CGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCAC 109633 Query 149194 GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCG 149253 | || || || ||| ||| |||||| | | | | ||| | || | Sbjct 109632 GGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGG 109573 Query 149254 CGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG---CTTGCCGCCCTGGTCGA 149310 ||||||| ||||||| ||| | |||| || ||| ||| ||||| |||||||||| Sbjct 109572 CGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGA 109513 Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370 ||| ||| | ||||||| || || || | ||| || | | || | | || |||| Sbjct 109512 CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGT 109453 Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430 |||| | ||| |||| || || | || ||||||| || ||||| | Sbjct 109452 TAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCAC 109393 Query 149431 CGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489 || | ||| ||||| |||| |||| ||| || |||||| ||||| || | Sbjct 109392 CGGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCGTAGATACCCTCAATAGAG 109334 Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549 || ||||||| | || ||||| ||| ||| || | | | || || || | Sbjct 109333 TCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTG 109274 Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGGCTCATCATCTCGTACGACTCGAG 149608 || | ||||| ||||| || || |||| || | ||||| | ||| | |||| Sbjct 109273 AAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCG-ACATCAGGTTGTAGGTTTCGAT 109215 Query 149609 CACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGG 149668 ||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| || Sbjct 109214 GACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGG 109155 Query 149669 TCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCC 149728 || ||| || | ||| ||| ||||| | ||| | || | |||||| |||| Sbjct 109154 TCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCC 109095 Query 149729 AAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 || || | ||||| ||||||||| | | | | ||||| | ||| Sbjct 109094 GAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 109050 >seq456 Length=89672 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 20925 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 20866 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| |||||||| |||||| |||| Sbjct 20865 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 20806 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 20805 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 20746 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 20745 TTGACGAAGATCTGCATG 20728 >seq444 Length=118335 Score = 116 bits (128), Expect = 4e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||| || ||||| || || || || ||||||||| || ||| Sbjct 61233 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 61174 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || || ||||| | || | |||||| |||| |||| ||| ||| || ||| Sbjct 61173 AGACCAGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 61114 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||||| ||| ||| ||||| || | ||||| ||| || | | | ||| | | Sbjct 61113 AAGATACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCG 61054 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||||||| ||||| |||||||| ||||| | ||| || Sbjct 61053 CTGATCCACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 61010 >seq154 Length=370784 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || | |||||||||||||| || ||||| ||||| Sbjct 211195 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTT 211136 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || || | ||| | Sbjct 211135 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 211076 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 211075 GGTCTTACCCGTCAGGGTCTTCACGAAA 211048 >seq120 Length=409222 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| ||| || ||| |||||| ||| Sbjct 294162 AAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 294221 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | |||||||||||||| || ||||| |||||||| ||| Sbjct 294222 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATC 294281 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || |||| || ||| || || | ||||| ||| |||||| Sbjct 294282 TTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 294341 Query 133635 GTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 294342 GTAAGCGTCTTGACGA 294357 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| ||| || ||| |||||| ||||||||||| Sbjct 293943 GTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 294002 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | |||||||||||||| ||||| || ||||| || ||||| |||| Sbjct 294003 GCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTG 294062 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | || || || | ||| | || ||||| || || || Sbjct 294063 ACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTC 294122 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 294123 TTAACGAAGATCTGCAT 294139 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| ||| || ||| |||||| ||| Sbjct 294446 AAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 294505 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | |||||||||||||| || ||||| |||||||| ||| Sbjct 294506 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATC 294565 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || |||| || ||| || || | ||| | ||| |||||| Sbjct 294566 TTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTGCCG 294625 Query 133635 GT 133636 || Sbjct 294626 GT 294627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414539700640