Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq431 152 5e-32 >seq431 Length=114165 Score = 152 bits (168), Expect = 5e-32 Identities = 969/1535 (63%), Gaps = 39/1535 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || || || ||||||| | || | ||| ||| | ||| Sbjct 110572 TTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 110513 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| |||| || ||||| || || || | ||| | || || |||||| ||| || Sbjct 110512 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACG 110453 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | | || || || | ||||| | ||| | |||||||||| | ||||||||| Sbjct 110452 AGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAG 110393 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | ||||||| | || |||||||||||||||||||| | || || | |||| Sbjct 110392 AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAA 110333 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190 || || |||| |||| || || || |||| | ||| | | || ||| | Sbjct 110332 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATG--GTGAGGG 110275 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | | | ||| ||||| || ||| | ||||||||| || || || |||| Sbjct 110274 CAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACTCGA 110215 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 | ||||| |||||| || |||||||| || | |||||||| ||||| || || || | Sbjct 110214 AGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGC 110155 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAAT 147368 | || |||||| | | || || || | || ||||||||| || || || Sbjct 110154 GGTGACGCATGTTGCT--GTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGAT 110097 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||| ||||| || || ||||| | || | | ||| |||| ||| || || Sbjct 110096 TCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 110037 Query 147429 CCCGTCTTCGACACGTACGCATTGGT--TCACGGCGATAGACGCCAGATTGCAGACGGCC 147486 || || | | || || ||| || ||||| || ||||| |||||||| || Sbjct 110036 GCCCTCGTTG--TAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCG 109979 Query 147487 GTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGAC 147545 ||| || |||| ||| ||||| | ||| || | ||| |||||| || ||| Sbjct 109978 ACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGT 109920 Query 147546 TCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 147605 || | || | ||| ||||| || || ||| || || ||| |||||||| | || Sbjct 109919 GCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTT 109860 Query 147606 GCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCG 147662 ||| |||||| || | || | ||| | ||| || | ||| || || Sbjct 109859 GCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC---AGAGCTTCTGGGCCTTCATGGT 109803 Query 147663 CTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTA 147722 || ||| |||| | |||||| ||||||||| ||| ||||| |||||||| Sbjct 109802 CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTA 109743 Query 147723 GCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTT 147782 ||| ||||| ||||| || |||| | || ||||| || | ||| ||| | | Sbjct 109742 GCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTC 109683 Query 147783 AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA 147842 || | ||| || || || || | ||| || ||| | ||| || || || Sbjct 109682 TACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAAC 109623 Query 147843 ATCCTC---GGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCC 147898 ||||| | || | ||||| || || ||| | | | ||| |||||||||| Sbjct 109622 CTCCTCCTTGCCGTGGTTCTTGCG---CAGATCCAAGAAGTCGA-AGACATCGGCGTGCC 109567 Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACG---CTTTCCGCCCTGGTCGACATGGC 147955 | || |||| ||||| ||| | ||||| || || || ||||||||||| | || Sbjct 109566 AAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGC 109507 Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015 | | ||||||| || || || | |||||| | | ||| ||| || ||||| ||| Sbjct 109506 GAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGC 109447 Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCCGCCG 148074 || | | |||| ||| || | | || || ||||| | |||||||| ||| | Sbjct 109446 CGGCAATATAGGAGCCGGTGGCACGGA-TGCGATGAACGTTGAGACCAATGCCACCGGCC 109388 Query 148075 TACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTT 148134 ||| || || |||||| | || |||||| || || || ||| | Sbjct 109387 ATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCC 109328 Query 148135 TTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGG 148194 || | | | | | || || || ||| || | | || || || ||| || Sbjct 109327 TTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGT 109268 Query 148195 GTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAGCGT 148252 |||||| ||||| || || ||||| | || ||||| | || || || || || Sbjct 109267 GTGGGAGAAGCGTGGGTGAAGAATTTGCTCGA--CATCAGGTTGTAGGTTTCGATGACGC 109210 Query 148253 CTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTT 148312 || | |||||| || || || | ||||| ||||||| ||||||||| |||| | Sbjct 109209 GCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCT 109150 Query 148313 CGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAG 148371 |||||| |||| || | |||||| || ||| | || | ||| ||| | || || Sbjct 109149 CGGCAATCTTG-CCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAA 109091 Query 148372 TACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || | ||| | || || | || || ||||||| Sbjct 109090 TATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 109056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605027884960