Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq431 147 3e-29 seq444 140 5e-27 seq369 107 3e-17 seq90 87.8 3e-11 seq354 86.0 9e-11 >seq431 Length=114165 Score = 147 bits (162), Expect = 3e-29 Identities = 336/503 (67%), Gaps = 17/503 (3%) Strand=Plus/Plus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||| | || ||| |||||||| | | | ||| ||||| |||| || || Sbjct 109034 GCACAAGGAAGAGCTTGACTCTGCCATCGTCTATGACCGCGACTTCAACTACCAATATTT 109093 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||||||| | || ||||| ||| | || | | | |||| | Sbjct 109094 CGGCTTCAAGACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAG 109153 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| |||||||||||||| |||| | |||| || ||||| Sbjct 109154 ACCCCAGCACATGATCATGCGTGTCGCCGTTGG--TATCTGGG-GTGACGACG------- 109203 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGC-AGTTGTTCACCTCAG 259919 | |||| ||| ||| |||||| | |||||| ||| | || |||||| | Sbjct 109204 -----TTGAGCGCGTCATCGAAACCTACAACCTGATGTCG-AGCAAATTCTTCACCCACG 109257 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | ||||| ||||| || || || || || | | ||| || || ||||| || Sbjct 109258 CTTCTCCCACACTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCG 109317 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||||| || || || ||||| ||||| ||||| |||||| ||||| | | Sbjct 109318 TCGACATGAAGGAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGA 109377 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 |||||||| |||||| ||||| ||| | || || | || ||| | ||| ||| Sbjct 109378 TCTCCAAGATGGCCGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCT 109437 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 | | || ||||| ||||| || ||||| | || |||||||| || || || ||| Sbjct 109438 ATATTGCCGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACA 109497 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||||||||||||| Sbjct 109498 ACACTGCTCGCTACGTCGACCAG 109520 >seq444 Length=118335 Score = 140 bits (154), Expect = 5e-27 Identities = 215/303 (71%), Gaps = 13/303 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| | || | Sbjct 60612 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 60670 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | | ||| || ||| | ||| Sbjct 60671 TGTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTC 60726 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||| |||||||||| || ||| || ||||||||| || ||||||| ||| Sbjct 60727 ATCTCGCACATCCTCGCCTTCTT-CGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGT 60785 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| |||| ||||| |||| || || || ||||| || Sbjct 60786 CGAGCGCTTCAGCGGCGAGGTCCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 60845 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || ||||||||| | || |||||||||||| ||||||| Sbjct 60846 CATGATGGAGAACATCCACTCAGAGACCTACTCGTTGCTCATCGACACCTACATCAAGGA 60905 Query 1456068 CCC 1456070 || Sbjct 60906 GCC 60908 Score = 107 bits (118), Expect = 3e-17 Identities = 119/156 (76%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| |||||||||||| | | ||| | |||| ||| ||| | Sbjct 61022 AAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTCCTC----CTTCGCCCA 61077 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| ||||| | ||| ||||| |||||||| ||||| ||| || ||| | |||| Sbjct 61078 GCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 61137 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| || || ||||| ||||| Sbjct 61138 CTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCT 61173 Score = 95.1 bits (104), Expect = 2e-13 Identities = 177/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || || ||||| || ||| |||||||| | ||||| | | |||| | ||||| | ||| Sbjct 61283 ATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCC--TTGCG 61340 Query 1456583 CTCA--TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| ||||||||||| ||| | || ||| |||||||||| | || ||||| ||||| Sbjct 61341 CTCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTCGTCGCTGACCG 61398 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 || | | || || ||| || ||| |||| | | |||| |||||| | | Sbjct 61399 TCTCTTGGTTGCTCTTGGC-AATGACAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTA 61457 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| || ||| || | || ||| ||| Sbjct 61458 TGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACC 61517 Query 1456760 CCAAGGCCGGCGT 1456772 |||||||| || Sbjct 61518 AGAAGGCCGGTGT 61530 >seq369 Length=515494 Score = 107 bits (118), Expect = 3e-17 Identities = 172/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| ||||| || | | || |||||||| || || |||||| | |||||||| | Sbjct 401187 CGTCGGTGAGCCGGGCGTACCGGAGGATGGCGCATCGCGACTGCAGCGGCTCGATGATCT 401128 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | ||| ||||||||| | ||| || |||||||| |||| | | ||||| || Sbjct 401127 TGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATCGTTC 401068 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 ||||| || || ||||| | | || | || ||||||||||||||| || | || || Sbjct 401067 GGCGGAGAGCTTGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGAATCACGAGCT 401008 Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCA 333095 ||||||| || || ||||| ||| | ||| |||| ||||||| || || | Sbjct 401007 TGTGGCGGCCCTGGGGCAGGGTGACCTTCTTCTGGGCGAAACCTTTGATGCGGTTACGGA 400948 Query 333096 CGACGTC 333102 ||||||| Sbjct 400947 CGACGTC 400941 >seq90 Length=626743 Score = 87.8 bits (96), Expect = 3e-11 Identities = 108/143 (76%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| |||| || |||||||||||| |||| | ||||| ||| | || || | ||| Sbjct 266276 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGTGAGCTCGCCTCCGGCCTG 266217 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| || Sbjct 266216 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 266158 Query 165887 CGT--GCG-CACTGCCGCCCAGC 165906 | | ||| | |||||||| ||| Sbjct 266157 CATTGGCGCCGCTGCCGCCAAGC 266135 >seq354 Length=249530 Score = 86.0 bits (94), Expect = 9e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584 ||||||| |||||||| ||| | || | ||||| |||||||||||| ||| | || Sbjct 201591 CATCGACACGGGCGCCGGTGTCATCGACGCTGACTACCGCGGCGAGGTTAAGGTCCTCCT 201532 Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644 |||||||| |||||||||||| || |||| | || | ||| |||||||| | | Sbjct 201531 CTTCAACCACGCCGACGCCGACTTTGAGGTCGCCGAGGGTGACCGCGTCGCCCAGCTCGT 201472 Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704 ||| || || | |||||| ||| ||||| || || || | || ||| Sbjct 201471 CGTCGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCGGAGCTCGAGGAGAGCGTGCG 201412 Query 334705 CGGCACCGGCGGCTTTGG 334722 |||| | |||||||| || Sbjct 201411 CGGCGCTGGCGGCTTCGG 201394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177711275895832