Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq431 84.2 3e-11
>seq431
Length=114165
Score = 84.2 bits (92), Expect = 3e-11
Identities = 295/461 (64%), Gaps = 0/461 (0%)
Strand=Plus/Minus
Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660
||||| || || ||||||||||| ||||| | || || || | || | | || ||
Sbjct 109675 TTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCC 109616
Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720
|| || || || ||||| | || || | | ||| | ||||| || || ||
Sbjct 109615 TTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGG 109556
Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780
|| || || | | ||||| ||||| || || ||||| || | ||| | ||||||||
Sbjct 109555 TAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTG 109496
Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840
|| |||| | ||||| || | | ||| || || |||| || || || | ||||||
Sbjct 109495 TTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAG 109436
Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900
|| | || || || | || ||||| || || || ||||| || |||||
Sbjct 109435 GAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATC 109376
Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960
| || ||| || | ||||| || |||||||| || || || |||||| |
Sbjct 109375 ATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACG 109316
Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020
|| || || |||| || || || || || || || | ||| ||||| |||
Sbjct 109315 AGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCG 109256
Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061
|| ||||| |||| || | ||| ||||| ||||| ||
Sbjct 109255 TGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGAT 109215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686899904531040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |