Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq444 113 1e-19 seq431 105 2e-17 >seq444 Length=118335 Score = 113 bits (124), Expect = 1e-19 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 443684 ACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTT 443743 ||||||| ||| ||||| | |||| || || || || || | ||||| || | || Sbjct 61056 ACGAGAAGTCCTC--CTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTT 61113 Query 443744 GTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTC 443803 || ||||| || || ||||||||||||||| | || |||||||| ||||||| |||| Sbjct 61114 CTTCAGCGGT-GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTC 61172 Query 443804 TGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTC 443863 ||||||| ||||| || ||| ||| || |||||| | || |||||| ||||| | Sbjct 61173 TGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCC 61232 Query 443864 TTCTCTAC 443871 | |||||| Sbjct 61233 TCCTCTAC 61240 >seq431 Length=114165 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| ||||||| ||||||||| |||||||||||||| || || ||| ||||||| Sbjct 109476 CCCATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAACGC 109535 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 || || || ||| |||||||||| ||||| ||||||||||| Sbjct 109536 CCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGA 109576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588314916825020