Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq431 196 6e-45 seq444 109 7e-19 >seq431 Length=114165 Score = 196 bits (216), Expect = 6e-45 Identities = 1012/1587 (64%), Gaps = 53/1587 (3%) Strand=Plus/Minus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 ||||||||||| || || || ||||| ||| ||||| | | ||| |||||| Sbjct 110716 ATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGG 110657 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| | | | ||| | | |||||| | | |||||| | ||| || | Sbjct 110656 ATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCG 110597 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||||| || | ||| |||||| | |||||||| || || | || | Sbjct 110596 ACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGC 110537 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 |||||||||| | ||||| || |||||||| || || || |||||||| || | |||| Sbjct 110536 TGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTG 110477 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 || || ||||| || || | | |||| ||| || | ||| | || |||||| | Sbjct 110476 CTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGC 110417 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACT 110882 ||||| | | | |||||||| || || | || || || || ||||||||| ||| Sbjct 110416 TCCTTCAAAGCGTCCCAGTCCCAG-AGATCCGAGGGCTTGACATT-CCACATGTCGTACT 110359 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | || || || |||| |||||||| | || | |||| || | | | | Sbjct 110358 GGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGG 110299 Query 110943 CCA-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 ||| | ||| | | |||| ||||| || ||||| |||||||| || Sbjct 110298 CCAGCTGCACCG-ACATGGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTT 110240 Query 111002 ATCTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCG 111056 | || || ||| || || | ||||| || | | | || |||| | Sbjct 110239 AGGTCGCGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCC-----AGGAAGGCATCAG 110185 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 | ||||| || ||||| | |||||| || | ||| ||||| || || || || || Sbjct 110184 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCT 110125 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 ||| || || || ||| |||| || ||| || || | ||||| || |||| Sbjct 110124 GAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGA 110065 Query 111177 TTTCATGAAGTTTTTCATAATC--AAAAGTGCGAG-TCTCTTCATTGACATACTTTGGAA 111233 || || || || | | || | | | | | | | ||| ||| | | || | Sbjct 110064 CCTCGTGGAGCTTCTGGAAGTCGTAGACGCCCTCGTTGTAGTCA---ACAAAGGTGGGCA 110008 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 ||||| || |||| ||||| || || |||||| | |||||| | || | Sbjct 110007 AGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCT 109948 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || || | |||||| || || || || | ||||| ||||| ||||| |||| Sbjct 109947 CCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGG 109888 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 |||||||||||||||||| | || | || ||||| ||||| | | ||| || || | Sbjct 109887 CGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCAT 109828 Query 111414 TCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTT 111469 ||| | | || | | || |||| ||| | || | ||| | ||||||||| Sbjct 109827 ACCAGAGCTTCTGGGCCT----TCATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTC 109772 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529 ||| | ||| || |||||||| || ||||| || || || || || || Sbjct 109771 TCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGG 109712 Query 111530 CAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 || | |||| ||| | || | ||| ||| |||| ||||||||| ||||| ||||||| Sbjct 109711 CACATGAGAGTCCA--GTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCC 109654 Query 111588 --ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 | || || |||| || || | ||| |||| || | || ||||| || | Sbjct 109653 AGAGAGCGAGGAAA--AGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAG 109596 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC--- 111702 || | ||| || | || ||| |||||||| |||||||| |||| |||| || || Sbjct 109595 ATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGG 109536 Query 111703 -CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 | || | | ||| | || | || ||||| || ||| ||| || || || ||||| | Sbjct 109535 GCGTTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGG 109477 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821 | | | ||| | || ||| || || || |||| || |||| | | Sbjct 109476 GGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGC 109417 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAG 111879 ||| | || | ||||| || || ||| ||| ||||| | ||||| | | | | || Sbjct 109416 GATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGT-CTTGAG 109359 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 || | |||||||| | || ||||||||||| || ||| ||||||||| ||||| Sbjct 109358 GGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAG 109299 Query 111940 CTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACC 111996 ||| || || || |||||||| |||||||| || || | ||||| |||| | | | Sbjct 109298 CTG-GGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGC 109240 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | |||||| || ||| || || | ||| |||| ||| || || ||| || | Sbjct 109239 T--CGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAAC 109182 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 ||||| ||||||| ||||| ||| || Sbjct 109181 GGCGACACGCATGATCATGTGCTGGGG 109155 >seq444 Length=118335 Score = 109 bits (120), Expect = 7e-19 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||||||||||||||| || || || || || || |||||| ||||| Sbjct 61228 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 61169 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| ||||| |||||||| | ||| | || | | ||| | ||| ||||||||| Sbjct 61168 AGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGAT 61109 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 |||||| || || || |||| ||||| | |||||||||| ||||| | || Sbjct 61108 ACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAG---GACTTCTCGTCGCT 61052 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTT 122864 | ||| |||| ||||| | |||||||| Sbjct 61051 GATCCACTTCAGAGCCCAGTCGGCCTTCTT 61022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023866985600