Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq431 268 1e-66
seq444 138 1e-27
>seq431
Length=114165
Score = 268 bits (296), Expect = 1e-66
Identities = 1060/1648 (64%), Gaps = 41/1648 (2%)
Strand=Plus/Minus
Query 117998 GATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 118057
||||||||| |||||| |||| ||| ||| | ||| ||||| | ||| || ||
Sbjct 110717 GATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTG 110658
Query 118058 GATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAAT 118114
||| || ||| || | | |||| | | |||||| | | ||||| | ||| ||
Sbjct 110657 GATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCAT 110601
Query 118115 CTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 118174
| || |||| || ||| ||||| || |||||||| || || ||
Sbjct 110600 GTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACG 110541
Query 118175 TCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 118234
|| | | ||||| |||| ||||| |||||||||||||| ||||| |||||||| || |
Sbjct 110540 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGA 110481
Query 118235 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAAT 118294
||| || || |||||||| || | |||||| ||| |||| ||| | | | | ||
Sbjct 110480 GGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT 110421
Query 118295 GCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAA 118354
| ||||| | |||||||||||| || | | || | | |||||| || |
Sbjct 110420 CTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTA 110361
Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414
||||||||| || || || | || || ||||| | |||| || |||||||| |||
Sbjct 110360 CTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTT 110301
Query 118415 CGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGC 118471
|||| | | || | | |||||| ||||| || || || ||||| ||
Sbjct 110300 GGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTT 110244
Query 118472 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCG 118530
|| | | ||||| || || || | | | ||| | | || |||| |
Sbjct 110243 GTTTAGGTCGCGAGCCTCAGGAGACTCGAA-GGGCATGCGCAGAGCCAGGAAGGCATCAG 110185
Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590
| ||||| ||||||||||| ||||| ||||| || | ||| || || ||||| ||
Sbjct 110184 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCT 110125
Query 118591 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650
|| || || || ||||| | || || || || | ||||||| ||||
Sbjct 110124 GAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGA 110065
Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---ACATACTTAGGAA 118707
|| || ||||| | | | || | || ||| | | | ||| | | || |
Sbjct 110064 CCTCGTGGAGCTTCTGGAAGTCGTAGACGC---CCTCGTTGTAGTCAACAAAGGTGGGCA 110008
Query 118708 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 118767
||||| || ||||| || || || | | |||||| | |||||| || || |
Sbjct 110007 AGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCT 109948
Query 118768 CCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827
||||||| | ||| || || |||||||| | |||||| || || ||| |||
Sbjct 109947 CCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGG 109888
Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887
||||||||||| |||||| | || | || ||||| || |||| || ||| || || |
Sbjct 109887 CGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCAT 109828
Query 118888 TCCAGA-CATCGGCAGCTGGCACAGTGGCGTTG----GCTCGCCCCTCTTCCTCGTACTT 118942
||||| | || | || || ||| ||| || |||| || | |||||||||
Sbjct 109827 ACCAGAGCTTCTG-GGCCTTCA---TGGTCTTGCGACCCTTGCCCATC-TGCTCGTACTT 109773
Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002
||| | ||| || ||||| || || | || | || || || || | ||
Sbjct 109772 CTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGG 109713
Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062
||| | ||||| ||| | || || ||| |||| ||||||||||||||| || |||||
Sbjct 109712 GCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCA 109653
Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122
||| || ||| || || || ||| | || || | || || || |||| ||
Sbjct 109652 GAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATC 109593
Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC---CT 119178
||| ||||| | || ||| |||||||| || || ||||| | |||| | |||| |
Sbjct 109592 CAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCG 109533
Query 119179 TACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238
| | | ||| |||||| || || | |||||| ||| || ||||| ||||| || |
Sbjct 109532 TTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGA 109474
Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGT 119298
|| ||| | || || || || || |||| || |||| | || |
Sbjct 109473 CGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGAT 109414
Query 119299 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 119358
| | || | |||||| || || ||| ||| ||||| ||||| | |||| ||
Sbjct 109413 GAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGT 109354
Query 119359 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAG 119418
||||||| || || || ||||| |||| | ||| ||||||||| |||| || |
Sbjct 109353 CGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-G 109295
Query 119419 GCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA--TACCTTGGG 119475
||||| || ||||||||||||||||| || || | |||||| |||| | | || |
Sbjct 109294 GCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCT--CG 109237
Query 119476 ACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 119535
||||| || |||||| || | |||| || ||| || || ||||| | | ||
Sbjct 109236 ACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGA 109177
Query 119536 CCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAAC 119595
| ||||| | ||||| |||||| | || | | || || ||| | |||||||
Sbjct 109176 CACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATG 109117
Query 119596 TCTTCTCCAAGGTCTTGAGACCAAAATA 119623
||||||||||||||| || |||||
Sbjct 109116 ATCTCTCCAAGGTCTTGAAGCCGAAATA 109089
>seq444
Length=118335
Score = 138 bits (152), Expect = 1e-27
Identities = 346/519 (67%), Gaps = 14/519 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| |||||||| |||||||| ||||| ||| ||| ||| |||||||||
Sbjct 61515 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATA 61456
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| || || || || || || | | || || | |||| | ||||||
Sbjct 61455 AAGTCGAACGGATTGGAAGACTTGTAGACCT-TGTCATTGCCAAGAGCAACCAAGAGACG 61397
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||||||||||| |||| | ||||||||| |||| || ||
Sbjct 61396 GTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGCA 61337
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| ||| ||| || | ||||| || | ||| | |
Sbjct 61336 AGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGTCCTC 61277
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|||| || | ||| || | | ||| | || | || ||| || |||||| ||
Sbjct 61276 AATGACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAGG--CA-GGCAAAGTC 61220
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
|||||||||||| ||||| |||||||| || || |||||| |||||| ||||| ||
Sbjct 61219 GGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAG 61160
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | || | || ||||||||| ||||| ||
Sbjct 61159 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGAC 61100
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200
||||| |||| ||| |||| || ||||| |||||| || | ||||||
Sbjct 61099 GGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGA---GGACTTCTCGTCGCTGATCCACTT 61043
Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239
|| ||||| | ||||| || ||| || || || ||
Sbjct 61042 CAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 61004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618427191264160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |