Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq431 271 9e-68 seq444 141 1e-28 >seq431 Length=114165 Score = 271 bits (300), Expect = 9e-68 Identities = 1139/1775 (64%), Gaps = 41/1775 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || ||| | ||||| || || ||| |||| ||| Sbjct 109155 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 109214 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 104339 | || || ||| || |||||| || | | |||| ||||| | || || |||| Sbjct 109215 ATCGAAACCTACAACCTGATGTCG--AGCAAATTCTTCACCCACGCTTCTCCCACACTCT 109272 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || |||| ||||| ||||||||| ||| || ||||||| Sbjct 109273 TCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGG 109332 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457 |||| || | |||||||| | || || | | | | ||||| | ||||| ||| ||| Sbjct 109333 ACTCTATTGAGGGTATCTACGACACCCTCAAG-ACT-TGCGCCATGATCTCCAAGATGGC 109390 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517 || || ||||| | || | ||| | | |||| || |||| || || Sbjct 109391 CGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTATATTGCCGGCAC 109450 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || ||| || | ||| | | || ||||| || || || ||| ||| || ||||| Sbjct 109451 TAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGCTCGCTA 109510 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 || | || | ||| | | || | || || |||| |||| |||||||| |||| Sbjct 109511 CGTCGACCAGGGTGG-CAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGC 109569 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | || ||| | || |||| ||||| || | ||||||| || Sbjct 109570 ACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTG 109629 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || || ||| ||||||||||||||| || |||||||||||||| || ||| ||| Sbjct 109630 CCCGTGACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGAAGA 109689 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 || | ||| ||||| | || || || || ||||| || |||| | || | Sbjct 109690 ACGGGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCG 109749 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAG----AAGGTCGGGCGACTGCGA 104867 ||||||| || ||| | ||| ||||||||| || | | ||||| ||| || Sbjct 109750 AGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATGA 109809 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || |||| || | ||| | || || ||| || | || ||||||||||| | | Sbjct 109810 AGG-CCCAGAAGC-----TCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACC 109863 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||| ||||| || ||| |||| ||||| || || ||||| | || | Sbjct 109864 CTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCA 109923 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || ||||| ||||| || || ||| | || | | |||||| || | Sbjct 109924 TCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCGCGG 109983 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 105106 | || ||||| || || |||| | |||| | ||| || | | | || | | | | | Sbjct 109984 TCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGA-CTACA-ACGAGGGCGTCTA 110041 Query 105107 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || | | || |||||||| || || | ||| | ||||| |||||| | || Sbjct 110042 CGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCAT 110101 Query 105166 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 || || ||||| ||| || ||||| || || ||| | ||||| || || Sbjct 110102 CGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGTCACCGCCCCAT 110161 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATT 105284 |||||||||||| |||||||| || |||| ||| | || || ||| | || || | Sbjct 110162 TGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTG-CGCATGCCCTTCGAGT 110220 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC--CGCTCT 105342 | || || || | || | || ||||||||||| || ||||| | ||| Sbjct 110221 CTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACGCTGCCCTCA 110280 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 | | || | || |||| ||| || || || || | || | |||||||| || Sbjct 110281 CCATGTCGGTGC--AGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCC 110338 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 105462 | || || || | || || | || |||||| | | || || | || || || Sbjct 110339 CGTCTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGA 110398 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 |||||| ||| | ||||| | |||||| || | ||| | || ||| ||| ||| | || Sbjct 110399 CTGGGACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGC 110458 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || || |||| | || |||||||| || || || |||||||| ||||| Sbjct 110459 GCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTA 110518 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 105642 ||| | |||||||| | | || | || || || ||||| | | |||||| Sbjct 110519 CACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAACCCTTG 110578 Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 105702 ||| || | ||||| || || ||| | |||||| | | |||||| | | ||| | Sbjct 110579 GCTCTTGAAGGACCTTGTCGACATGGGTTTGTGGTCCGATGCCATGAAGAACCGCATCAT 110638 Query 105703 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTA 105762 | | ||||| || || || || | || || | ||| | ||| |||| Sbjct 110639 TGCCGAGAACGGTTCGATCCAGAACATCCCCAACATCCCTACTGAGGTCAAGGCCCTGTA 110698 Query 105763 CCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 105822 | || |||||||||||| | ||| | | ||||| || || |||||| Sbjct 110699 CAAGACTGTTTGGGAAATCTCTCAGCGTACCGTCGTGCAGATGGCTGCCGACCGTGGTGC 110758 Query 105823 CTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAG 105880 ||||||||| | |||| ||| | || | |||| | || || ||| ||| Sbjct 110759 CTTCATTGACC--AGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAAA 110816 Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 105940 || | |||||| | | | |||||| ||||| || ||||| ||||| ||||| Sbjct 110817 ATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTGAAGACGGGCATGTACTACCTG 110876 Query 105941 CGATCTAAGGCAAAGGC-GCGCCCAATTCAGTTCA 105974 || | |||| || |||||| |||||||||| Sbjct 110877 CGCACGCAGGCTGCTGCTGCGCCC-ATTCAGTTCA 110910 >seq444 Length=118335 Score = 141 bits (156), Expect = 1e-28 Identities = 174/236 (74%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 94779 |||||| |||||||| || || | ||||| || || |||||| |||||||| | Sbjct 60998 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGC 61054 Query 94780 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 94839 || ||||| ||||| || |||| ||| | || || || || ||||||||| Sbjct 61055 GACGAGAAGTCC---TCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATC 61111 Query 94840 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 94899 |||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| ||| Sbjct 61112 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGT 61171 Query 94900 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||||||||||||| ||||||||||| ||||| |||||| || ||||| Sbjct 61172 CTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGC 61227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253246772640