Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq120 129 2e-24
seq456 120 9e-22
seq338 104 7e-17
>seq120
Length=409222
Score = 129 bits (142), Expect = 2e-24
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || ||||| ||||| || ||||| || || || || ||
Sbjct 293678 TTACTGACCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTA 293737
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
||| || || || ||||| || | || || ||||| || || ||||| ||||||||
Sbjct 293738 GTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATC 293797
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
|||||||| || || || |||||||| || | || || || ||||||| || || |
Sbjct 293798 GGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGA 293857
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || ||||| | ||||||||||| | || || || || ||||||||
Sbjct 293858 CTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
Score = 120 bits (132), Expect = 9e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| | ||||| |||||||| || || || || |
Sbjct 294417 TTTGCATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 294476
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || ||||| || || ||||| ||||| | || ||||| |
Sbjct 294477 AGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGT 294536
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || |||||||| |||| || || || || || | ||| || |
Sbjct 294537 CGGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGG 294596
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || ||||| |||| ||||| |||||
Sbjct 294597 ACTCGACCTCAAGGGTAATGGTCTTGCCGGT 294627
Score = 102 bits (112), Expect = 2e-16
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || |||||||| || || || || || ||
Sbjct 294137 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 294196
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || ||||| ||||| | || ||||| || ||
Sbjct 294197 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGG 294256
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || || || || || | ||| || | ||
Sbjct 294257 GGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTC 294316
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| ||||| || | ||||| ||||| || || || ||
Sbjct 294317 GACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 294355
>seq456
Length=89672
Score = 120 bits (132), Expect = 9e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | |||||||||||||| || || || || || ||
Sbjct 20959 CATACCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 20900
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || |||||||| ||||| || || ||||| |||||
Sbjct 20899 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGG 20840
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 20839 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 20780
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || || ||||||||
Sbjct 20779 CACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729
>seq338
Length=188146
Score = 104 bits (114), Expect = 7e-17
Identities = 102/131 (78%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || |||||| | || || ||| || || | ||||||||| || ||||| |||||
Sbjct 20593 CGAGGGACACCAAGCGTGACGTTC---TTGGACGAAACACCAGCGAAATGGAAGGTATTC 20537
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| |||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct 20536 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATAACACCGACCATCTCG 20477
Query 377578 CCAGGATTGAC 377588
|||||| ||||
Sbjct 20476 CCAGGACTGAC 20466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515234286891908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |