Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq120 129 2e-24 seq456 120 9e-22 seq338 104 7e-17 >seq120 Length=409222 Score = 129 bits (142), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || ||||| ||||| || ||||| || || || || || Sbjct 293678 TTACTGACCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTA 293737 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||| || || || ||||| || | || || ||||| || || ||||| |||||||| Sbjct 293738 GTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATC 293797 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||||| || || || |||||||| || | || || || ||||||| || || | Sbjct 293798 GGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGA 293857 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| | ||||||||||| | || || || || |||||||| Sbjct 293858 CTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911 Score = 120 bits (132), Expect = 9e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||||| |||||||| || || || || | Sbjct 294417 TTTGCATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 294476 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || ||||| || || ||||| ||||| | || ||||| | Sbjct 294477 AGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGT 294536 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || |||||||| |||| || || || || || | ||| || | Sbjct 294537 CGGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGG 294596 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || ||||| |||| ||||| ||||| Sbjct 294597 ACTCGACCTCAAGGGTAATGGTCTTGCCGGT 294627 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || |||||||| || || || || || || Sbjct 294137 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 294196 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| | || ||||| || || Sbjct 294197 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGG 294256 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || || || || || | ||| || | || Sbjct 294257 GGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTC 294316 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || | ||||| ||||| || || || || Sbjct 294317 GACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 294355 >seq456 Length=89672 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | |||||||||||||| || || || || || || Sbjct 20959 CATACCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 20900 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||| ||||| || || ||||| ||||| Sbjct 20899 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGG 20840 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 20839 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 20780 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || || |||||||| Sbjct 20779 CACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729 >seq338 Length=188146 Score = 104 bits (114), Expect = 7e-17 Identities = 102/131 (78%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | ||||||||| || ||||| ||||| Sbjct 20593 CGAGGGACACCAAGCGTGACGTTC---TTGGACGAAACACCAGCGAAATGGAAGGTATTC 20537 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| ||||||||||| || ||||| || Sbjct 20536 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATAACACCGACCATCTCG 20477 Query 377578 CCAGGATTGAC 377588 |||||| |||| Sbjct 20476 CCAGGACTGAC 20466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515234286891908