Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq431 399 2e-106 seq456 167 3e-36 seq120 167 3e-36 seq154 114 1e-20 >seq431 Length=114165 Score = 399 bits (442), Expect = 2e-106 Identities = 962/1433 (67%), Gaps = 52/1433 (4%) Strand=Plus/Minus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || || || ||| | || | ||| | ||||| |||||||| |||| Sbjct 110560 AACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCG 110501 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || | |||||| | ||||| || |||||||| || |||| | || || || Sbjct 110500 TTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTG 110441 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCA---ACCCCAACG 80532 || | ||||||| |||||| | ||| |||| | | || | || | || | | Sbjct 110440 CGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGC-GTCCCAGTCCCAGAGATCCGAGGG 110382 Query 80533 CTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACG 80590 || |||| ||||||||||| ||| | |||||||| || | || || ||| || ||| Sbjct 110381 CT-TGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACG 110323 Query 80591 TCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGACTCCATAAGGGCCGCGTGATAA 80649 ||| ||| ||||||||| ||||||||||| ||| |||| | ||||| ||||| || Sbjct 110322 TCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCAC-CGACATGGTGAGGGCAGCGTGGTAG 110264 Query 80650 ATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCC 80709 ||| |||||||| |||||| | |||| |||| || ||||| | || || | Sbjct 110263 ATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACTCGAAGGGCATGCGC 110204 Query 80710 ATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTG 80769 | || ||| | ||||| || ||||| || |||| | || |||||||| ||| || Sbjct 110203 AGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATG 110144 Query 80770 TT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828 || | | || |||||| ||| ||||| ||| ||||||| | ||||||||| Sbjct 110143 TTGCTGTTGC-GAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTT 110085 Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA------TTGGTTCCC 80882 ||| ||||||| | || || || || || ||||| |||||| | | ||| Sbjct 110084 GCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACGCCCTCGTTGTA 110025 Query 80883 CTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 | ||||| | || ||||| || || ||||| ||||| || || ||||| |||| Sbjct 110024 GTCAACAAAGGTGGGCAAGGC-GAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCG 109966 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001 | |||||| ||| |||||||| | || || || || || ||||| |||| Sbjct 109965 CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCT 109906 Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061 |||| |||| |||| || ||||||||| |||| | ||| | || |||||| || Sbjct 109905 GGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCT 109846 Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTG-CCT 81120 | | || ||||||||| | ||| | || | ||||| | |||||| ||| || Sbjct 109845 GGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCA 109786 Query 81121 TCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTC 81179 || | | | ||||| |||| | ||||||| | |||| | || || | ||| | Sbjct 109785 TCTG-CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAG-TCGGCCAGGCC 109728 Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239 ||||||||||| |||||||| || |||||| || |||||||| ||||||||| Sbjct 109727 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAA 109668 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTG 81299 ||| || |||||||| ||| ||| ||||| ||| || ||||||| | || || Sbjct 109667 GAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTG 109608 Query 81300 GTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC 81359 ||| ||||| || | ||||| | || || || ||||| ||||| || || | ||| Sbjct 109607 GTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGC 109548 Query 81360 GATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATAC 81416 || | ||| ||| ||||||||||| |||||| || ||||| ||| || || Sbjct 109547 GAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 109488 Query 81417 ACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTT 81476 ||| | ||| |||| || ||| | || |||||| || || | ||| || || | Sbjct 109487 ACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGT 109428 Query 81477 GGCGCGCACCTTGC--TGA---TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGA 81531 ||| || | ||| ||| ||| ||||| |||||||| | | ||| || ||| Sbjct 109427 GGCACGGA---TGCGATGAACGTTG--AGACCAATGCCACCGGCCATCTTGGAGATCATG 109373 Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC------- 81584 || || || | ||| || || || ||||| || || | |||||||| Sbjct 109372 GCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGG 109313 Query 81585 AAGCAAGA-AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGG 81643 |||||||| |||||| | | ||||||| | || || ||||| ||||| || | Sbjct 109312 AAGCAAGAGGACAGCTGGGC--CTGAGGG------GTACCAGCGTTGAAGAGTGTGGGAG 109261 Query 81644 TCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATAT 81703 ||||| |||| | | | |||||||||| |||||||| ||||||| || | Sbjct 109260 AAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGT 109201 Query 81704 CGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 ||||||| ||||| | || |||||||| | ||||| |||||| ||||| Sbjct 109200 CGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCG 109148 >seq456 Length=89672 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || || |||||||| || |||||||| ||||| Sbjct 20726 ATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 20785 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 20786 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 20845 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || ||||| ||||| |||||||| | || ||||| | ||||| Sbjct 20846 CAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 20905 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || |||||||| | ||| |||| || || ||||| Sbjct 20906 AACATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCGCCTCCGTGGTGG 20955 >seq120 Length=409222 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||||||||||||||||||||| || || |||||||| ||||| |||| ||| | Sbjct 294355 GTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGAC 294296 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || ||||| | || ||||||||||||||||| ||||| || ||||||||||| | || Sbjct 294295 AACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATC 294236 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||||||||| || ||||| | || ||||| | ||||| || |||| ||||| Sbjct 294235 TTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAG 294176 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | || ||||||| || ||||| Sbjct 294175 TCTACCCTCCACTTGGTGCTGCGTCTCCGTGGTGG 294141 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || || ||||| ||||| Sbjct 293911 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 293852 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || ||||||||||||||||| |||||||| || ||| Sbjct 293851 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 293792 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| ||||| | ||||||| || ||| | ||||| || Sbjct 293791 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 293732 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || ||||| || ||| | ||||| || || || || Sbjct 293731 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGGTCA 293682 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| ||||| |||||||| ||||| |||| ||| | || ||||| || Sbjct 294627 ACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGTCT 294568 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || ||||||||||| | || || ||||||||| Sbjct 294567 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTAAG 294508 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| | ||||| || |||| ||||| || || ||||| Sbjct 294507 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 294448 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || ||||| ||||| Sbjct 294447 TTGGTTCTCCGCCTTCGTGGTGG 294425 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||||||||| |||||||| || || Sbjct 294139 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 294080 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||| || |||||||| || || || |||||| Sbjct 294079 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 294020 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 294019 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 293960 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| ||||| ||||| ||| | || || ||||| || Sbjct 293959 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGG 293913 >seq154 Length=370784 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 211049 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 211108 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 211109 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 211168 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| |||||||| | || ||||| | ||||| || |||| ||| Sbjct 211169 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 211228 Query 27595 G 27595 | Sbjct 211229 G 211229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303014480320