Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq17 86.0 5e-12 >seq17 Length=653669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 185/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 |||||||| || ||| |||| ||| || | | | ||| ||||| || || || Sbjct 343500 AGCTGATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAG 343441 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || | ||| ||||| ||||| || || || ||||| || |||| | ||| || ||| Sbjct 343440 TGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGATGCGAGAGGCCA 343381 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAG 30367 |||| | || || | || |||||| ||||||||||||| || || ||| Sbjct 343380 ACGCTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACGCCTGCCTCGCTC 343321 Query 30368 AGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 || | |||| |||| ||||| |||||||||||||||||| | | |||||| Sbjct 343320 AGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTCGGCGATGACGGC--G 343264 Query 30427 CCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 30456 | || ||||| | ||| || || |||||||| Sbjct 343263 CGAAGGAAGACGCGCTTCGTGGTAAGGAGGGG 343232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305269823312