Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq17 86.0 5e-12
>seq17
Length=653669
Score = 86.0 bits (94), Expect = 5e-12
Identities = 185/272 (68%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247
|||||||| || ||| |||| ||| || | | | ||| ||||| || || ||
Sbjct 343500 AGCTGATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAG 343441
Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307
|| | ||| ||||| ||||| || || || ||||| || |||| | ||| || |||
Sbjct 343440 TGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGATGCGAGAGGCCA 343381
Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAG 30367
|||| | || || | || |||||| ||||||||||||| || || |||
Sbjct 343380 ACGCTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACGCCTGCCTCGCTC 343321
Query 30368 AGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426
|| | |||| |||| ||||| |||||||||||||||||| | | ||||||
Sbjct 343320 AGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTCGGCGATGACGGC--G 343264
Query 30427 CCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 30456
| || ||||| | ||| || || ||||||||
Sbjct 343263 CGAAGGAAGACGCGCTTCGTGGTAAGGAGGGG 343232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406305269823312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |