Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq120 116 3e-21
>seq120
Length=409222
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || |||||| ||||||| ||||| || ||| ||||
Sbjct 294139 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 294080
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || |||||||| || || || || || ||||| ||
Sbjct 294079 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 294020
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||| ||||| || | || ||| | ||| | ||||| ||||||
Sbjct 294019 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 293960
Query 27168 ATTCAAAAGGAGTCGAC 27184
||||| ||||| || ||
Sbjct 293959 ATTCAGAAGGAATCTAC 293943
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||| ||||||| ||| | || || || || || || | ||
Sbjct 293911 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 293852
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | ||||| || ||||| ||||| || || || || ||||||||
Sbjct 293851 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 293792
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| ||||| || ||||| || | ||| | || ||||||
Sbjct 293791 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 293732
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| || |||||||||||
Sbjct 293731 ATCCAGAAGGAGTCGAC 293715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434912767806720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |