Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq17 118 1e-21 >seq17 Length=653669 Score = 118 bits (130), Expect = 1e-21 Identities = 213/301 (71%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380 || || ||||||||||||| |||| || || || || || |||| ||| || || | Sbjct 343331 GGCGTTAAGATCTGGGACGGCAACGGCTCACGTGAGTTCCTTGACA-GCGTTGGCCTCTC 343389 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 ||| || | |||||| | ||||| |||||||| ||||| ||| |||||||||| || Sbjct 343390 GCATCGCGAAGTCGGCGACCTCGGCCCTGTCTACGGTTTCCAATGGCGACACTTTGGCGC 343449 Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTAC 34498 |||||| | | || ||| |||| || |||| ||||| | || ||||| || | | Sbjct 343450 CGAGTAT-GTCGACGCCAAGACGGATTACACGGGCCAGGGCGTCGATCAGCTCGCCG-AG 343507 Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 || ||| ||| ||||| |||||| | ||| | | ||| | | ||||||||||| Sbjct 343508 GTCATCCACAAGCTGAAGACGAACCCGTACGACCGCCGCATCCTTCTCAGCGCGTGGAAC 343567 Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT 34617 || ||| || |||||| ||||| || ||||||| | ||| ||||||||||| Sbjct 343568 CCCGCGGACCTAAAGAAGATGGCCCTCCCGCCTTGCCACA-TGTTTGCGCAATTCTACGT 343626 Query 34618 C 34618 | Sbjct 343627 C 343627 Score = 118 bits (130), Expect = 1e-21 Identities = 213/301 (71%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 |||||||||||| ||| | ||||||| || ||||| |||||| || ||| | Sbjct 343627 GACGTAGAATTGCGCAAACA-TGTGGCAAGGCGGGAGGGCCATCTTCTTTAGGTCCGCGG 343569 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||||||||| | | ||| | | ||| | |||||| ||||| ||| ||| | Sbjct 343568 GGTTCCACGCGCTGAGAAGGATGCGGCGGTCGTACGGGTTCGTCTTCAGCTTGTGGATGA 343509 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903 | | | || ||||| || | ||||| |||| || |||| ||| || | | |||||| Sbjct 343508 CCT-CGGCGAGCTGATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGAC-ATACTC 343451 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 || |||||||||| ||| ||||| |||||||| ||||| | |||||| | || ||| Sbjct 343450 GGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGATG 343391 Query 6964 TGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022 | || || ||| |||| || || || || || |||| ||||||||||||| || | Sbjct 343390 CGAGAGGCCAACGC-TGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACGC 343332 Query 7023 C 7023 | Sbjct 343331 C 343331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256595001920