Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq17 118 1e-21
>seq17
Length=653669
Score = 118 bits (130), Expect = 1e-21
Identities = 213/301 (71%), Gaps = 8/301 (3%)
Strand=Plus/Plus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380
|| || ||||||||||||| |||| || || || || || |||| ||| || || |
Sbjct 343331 GGCGTTAAGATCTGGGACGGCAACGGCTCACGTGAGTTCCTTGACA-GCGTTGGCCTCTC 343389
Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440
||| || | |||||| | ||||| |||||||| ||||| ||| |||||||||| ||
Sbjct 343390 GCATCGCGAAGTCGGCGACCTCGGCCCTGTCTACGGTTTCCAATGGCGACACTTTGGCGC 343449
Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTAC 34498
|||||| | | || ||| |||| || |||| ||||| | || ||||| || | |
Sbjct 343450 CGAGTAT-GTCGACGCCAAGACGGATTACACGGGCCAGGGCGTCGATCAGCTCGCCG-AG 343507
Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558
|| ||| ||| ||||| |||||| | ||| | | ||| | | |||||||||||
Sbjct 343508 GTCATCCACAAGCTGAAGACGAACCCGTACGACCGCCGCATCCTTCTCAGCGCGTGGAAC 343567
Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT 34617
|| ||| || |||||| ||||| || ||||||| | ||| |||||||||||
Sbjct 343568 CCCGCGGACCTAAAGAAGATGGCCCTCCCGCCTTGCCACA-TGTTTGCGCAATTCTACGT 343626
Query 34618 C 34618
|
Sbjct 343627 C 343627
Score = 118 bits (130), Expect = 1e-21
Identities = 213/301 (71%), Gaps = 8/301 (3%)
Strand=Plus/Minus
Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
|||||||||||| ||| | ||||||| || ||||| |||||| || ||| |
Sbjct 343627 GACGTAGAATTGCGCAAACA-TGTGGCAAGGCGGGAGGGCCATCTTCTTTAGGTCCGCGG 343569
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845
|||||||||||| | | ||| | | ||| | |||||| ||||| ||| ||| |
Sbjct 343568 GGTTCCACGCGCTGAGAAGGATGCGGCGGTCGTACGGGTTCGTCTTCAGCTTGTGGATGA 343509
Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903
| | | || ||||| || | ||||| |||| || |||| ||| || | | ||||||
Sbjct 343508 CCT-CGGCGAGCTGATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGAC-ATACTC 343451
Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963
|| |||||||||| ||| ||||| |||||||| ||||| | |||||| | || |||
Sbjct 343450 GGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGATG 343391
Query 6964 TGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022
| || || ||| |||| || || || || || |||| ||||||||||||| || |
Sbjct 343390 CGAGAGGCCAACGC-TGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACGC 343332
Query 7023 C 7023
|
Sbjct 343331 C 343331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448256595001920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |