Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq456 167 5e-36
seq120 158 3e-33
seq154 125 2e-23
>seq456
Length=89672
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||||||||| ||||| || |||||||| || || | ||||| | || ||
Sbjct 20940 AGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 20881
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| ||||| || |||||||| || | || |||||||||
Sbjct 20880 TCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 20821
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 20820 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 20761
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 20760 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729
>seq120
Length=409222
Score = 158 bits (174), Expect = 3e-33
Identities = 172/226 (76%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948
|| ||| || | |||||||||||||| || ||||| || |||||||| || || | |||
Sbjct 293687 TCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAA 293746
Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008
||| | ||||| |||| ||||||||| ||||| || || || || || || |||||||
Sbjct 293747 -GGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAA 293805
Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068
|| ||||||||||| ||||| || ||||| || || ||||| || || ||||
Sbjct 293806 TACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCT 293865
Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || |||||||||||||| || | |||||| || || | ||||||
Sbjct 293866 CTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| || |||||||| || || | ||||| | || ||
Sbjct 294156 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 294215
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| | ||| || ||||| || |||| || |||||||||
Sbjct 294216 TCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 294275
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| |||||||| |||||||| || ||| || ||||| || ||||| |||
Sbjct 294276 TGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTC 294335
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || || || ||||| ||
Sbjct 294336 TTGCCGGTAAGCGTCTTGAC 294355
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||| || ||||| || |||||||| || || | |||||
Sbjct 294430 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 294489
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || |||||||| || |||||||| | ||| || ||||| || |||| ||
Sbjct 294490 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCC 294549
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| |||||||| |||||||| || ||| || ||||| ||
Sbjct 294550 CTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 294609
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
|| || ||||| || ||||
Sbjct 294610 GGTAATGGTCTTGCCGGTGA 294629
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || ||||| || || || || ||||| || || | ||||| | || ||
Sbjct 293928 AGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 293987
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | ||| || ||||| || || | || ||||| ||
Sbjct 293988 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 294047
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||||||||| || ||| ||||| || || || |||
Sbjct 294048 TGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 294107
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 294108 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139
>seq154
Length=370784
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | || || || ||||||||||| ||||||||
Sbjct 211227 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 211168
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||| || ||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 211167 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 211108
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 211107 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 211049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159136613706140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |