Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq456 167 5e-36 seq120 158 3e-33 seq154 125 2e-23 >seq456 Length=89672 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| ||||| || |||||||| || || | ||||| | || || Sbjct 20940 AGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 20881 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 20880 TCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 20821 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 20820 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 20761 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 20760 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729 >seq120 Length=409222 Score = 158 bits (174), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || ||| || | |||||||||||||| || ||||| || |||||||| || || | ||| Sbjct 293687 TCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAA 293746 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||| | ||||| |||| ||||||||| ||||| || || || || || || ||||||| Sbjct 293747 -GGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAA 293805 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 || ||||||||||| ||||| || ||||| || || ||||| || || |||| Sbjct 293806 TACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCT 293865 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || |||||||||||||| || | |||||| || || | |||||| Sbjct 293866 CTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||||| | || || Sbjct 294156 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 294215 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||| || ||||| || |||| || ||||||||| Sbjct 294216 TCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 294275 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| |||||||| || ||| || ||||| || ||||| ||| Sbjct 294276 TGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTC 294335 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || || || ||||| || Sbjct 294336 TTGCCGGTAAGCGTCTTGAC 294355 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || ||||| || |||||||| || || | ||||| Sbjct 294430 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 294489 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || |||||||| | ||| || ||||| || |||| || Sbjct 294490 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCC 294549 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| |||||||| |||||||| || ||| || ||||| || Sbjct 294550 CTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 294609 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 || || ||||| || |||| Sbjct 294610 GGTAATGGTCTTGCCGGTGA 294629 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| || || || || ||||| || || | ||||| | || || Sbjct 293928 AGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 293987 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || ||||| || Sbjct 293988 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 294047 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||||||||| || ||| ||||| || || || ||| Sbjct 294048 TGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 294107 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 294108 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139 >seq154 Length=370784 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | || || || ||||||||||| |||||||| Sbjct 211227 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 211168 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 211167 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 211108 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 211107 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 211049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159136613706140