Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq456 131 4e-25
seq120 131 4e-25
seq115 118 3e-21
seq956 95.1 3e-14
seq431 95.1 3e-14
seq482 89.7 1e-12
>seq456
Length=89672
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| | ||| ||||| || || || |||| ||||| |||| | ||
Sbjct 20950 ACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 20891
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| || || || ||||| || || || ||
Sbjct 20890 GCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCC 20831
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 20830 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 20771
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| ||||| | || || | ||| | |||||
Sbjct 20770 GGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729
>seq120
Length=409222
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| || || || || || |||| ||||| || ||| || | |||||
Sbjct 293700 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCC 293759
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||| || || || || || ||||| |||||||| ||||||||
Sbjct 293760 TCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 293819
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || || || ||||| || | || || |||| |||||||||
Sbjct 293820 TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTC 293879
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||||||| || | ||| | |||||
Sbjct 293880 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || ||||| ||||| || || | ||||| |||| || || | || ||
Sbjct 293928 AGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 293987
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| | || || |||||||| || ||||| ||||| |||
Sbjct 293988 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 294047
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || |||||||||||||| | ||| || || | || || |||
Sbjct 294048 TGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 294107
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 294108 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | |||||| || || || || |||| ||||| |||| || ||
Sbjct 294146 ACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 294205
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| | || || |||||||| ||||| ||
Sbjct 294206 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCC 294265
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| |||||| |||||||| || |||| || || || |
Sbjct 294266 CTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 294325
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 294326 GGTGATGGTCTTGCCGGT 294343
Score = 114 bits (126), Expect = 3e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || || || || || |||| ||||| |||| || ||
Sbjct 294430 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 294489
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| | || || |||||||| ||||| ||
Sbjct 294490 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCC 294549
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| |||||| |||||||| || |||| || || || |
Sbjct 294550 CTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 294609
Query 225672 CGTGATCGTCTTGCCCGT 225689
|| || |||||||| ||
Sbjct 294610 GGTAATGGTCTTGCCGGT 294627
>seq115
Length=292512
Score = 118 bits (130), Expect = 3e-21
Identities = 196/280 (70%), Gaps = 5/280 (2%)
Strand=Plus/Minus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| ||||| ||||| |||| | ||||| || | ||||||| || ||| | |
Sbjct 96047 ACTTTATACTTAATTTTTGCTTTATTTTCAGGGTTATTAGGTACAGCTTTCTCTGTATTA 95988
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTA 7559
||||| ||||||||| || || ||| |||| ||||| | || | |||| | ||
Sbjct 95987 ATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATT---TCAGAAAA-CCAATTATA 95932
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
|| ||| ||||| || ||||| | ||||||| |||||| | ||||||| || |
Sbjct 95931 TAATAGTATAATTACAGCACATGCTATACTTATGATATTCTTTATGGTTATGCAGGCATT 95872
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
|| || ||||| || || | || | ||||||||| | |||| ||||||||||| ||
Sbjct 95871 AATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCTGATATGGCATT 95812
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
||||| | || || |||||||| ||| || |||| |||
Sbjct 95811 CCCAAGATTAAATAACATAAGTTTCTGACTATTACCTCCT 95772
>seq956
Length=1563
Score = 95.1 bits (104), Expect = 3e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| ||||| || |||||||| | |||||| || | |||||||| ||||| ||||
Sbjct 1091 TTCAGGGTGACCGAAGAATCAGAAAAGATGTTGGTATAATATAGGATCACCTCCACCTGC 1150
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773
|| ||||| || ||||||||||||||||| ||||||||
Sbjct 1151 TGTTTCAAAGAATGATGTATTAAAATTTCTATCTGTTAAAAC 1192
>seq431
Length=114165
Score = 95.1 bits (104), Expect = 3e-14
Identities = 184/272 (68%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | ||| || ||||||| ||||| || |||| |||
Sbjct 109909 TTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCG 109850
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| || || |||| ||| || ||| || | || || |||| ||| | | ||||
Sbjct 109849 GTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTG 109790
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| | ||||||||| ||||||| |||| || || | |||||| ||| | ||
Sbjct 109789 CCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGG 109730
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || ||||| | |||| |||| || || | | || ||||||||||||
Sbjct 109729 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 109670
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|||||||| | |||| | ||| ||||||
Sbjct 109669 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAG 109638
>seq482
Length=204
Score = 89.7 bits (98), Expect = 1e-12
Identities = 141/197 (72%), Gaps = 9/197 (5%)
Strand=Plus/Plus
Query 7490 TTTCTATG-ATTA-TAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTG-AGTGGT 7545
||||| || |||| |||| ||||||||| || || ||| |||| ||||| ||
Sbjct 13 TTTCTCTGTATTAATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATTTCAG---- 68
Query 7546 AATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTT 7605
||| |||| | || || ||| ||||| || ||||| | ||||||| |||||| |
Sbjct 69 -ATAACCAATTATATAATAGTATAATTACAGCACATGCTATACTTATGATATTCTTTATG 127
Query 7606 GTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCT 7665
|||||||||| | || || ||||| || || | || | ||||||||| | ||||
Sbjct 128 GTTATGCCGGCATTAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGA 187
Query 7666 CCTGATATGGCTTTTCC 7682
||||||||||| || ||
Sbjct 188 CCTGATATGGCATTCCC 204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192515370638984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |