Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq456 131 4e-25 seq120 131 4e-25 seq115 118 3e-21 seq956 95.1 3e-14 seq431 95.1 3e-14 seq482 89.7 1e-12 >seq456 Length=89672 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | ||| ||||| || || || |||| ||||| |||| | || Sbjct 20950 ACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 20891 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| || || || || Sbjct 20890 GCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCC 20831 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 20830 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 20771 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | || || | ||| | ||||| Sbjct 20770 GGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729 >seq120 Length=409222 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || || || || |||| ||||| || ||| || | ||||| Sbjct 293700 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCC 293759 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || || || || || ||||| |||||||| |||||||| Sbjct 293760 TCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 293819 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || || ||||| || | || || |||| ||||||||| Sbjct 293820 TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTC 293879 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 293880 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || ||||| ||||| || || | ||||| |||| || || | || || Sbjct 293928 AGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 293987 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || |||||||| || ||||| ||||| ||| Sbjct 293988 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 294047 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || |||||||||||||| | ||| || || | || || ||| Sbjct 294048 TGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 294107 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 294108 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | |||||| || || || || |||| ||||| |||| || || Sbjct 294146 ACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 294205 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || |||||||| ||||| || Sbjct 294206 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCC 294265 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||| |||||||| || |||| || || || | Sbjct 294266 CTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 294325 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 294326 GGTGATGGTCTTGCCGGT 294343 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || || || || |||| ||||| |||| || || Sbjct 294430 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 294489 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || |||||||| ||||| || Sbjct 294490 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCC 294549 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||| |||||||| || |||| || || || | Sbjct 294550 CTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 294609 Query 225672 CGTGATCGTCTTGCCCGT 225689 || || |||||||| || Sbjct 294610 GGTAATGGTCTTGCCGGT 294627 >seq115 Length=292512 Score = 118 bits (130), Expect = 3e-21 Identities = 196/280 (70%), Gaps = 5/280 (2%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||| ||||| |||| | ||||| || | ||||||| || ||| | | Sbjct 96047 ACTTTATACTTAATTTTTGCTTTATTTTCAGGGTTATTAGGTACAGCTTTCTCTGTATTA 95988 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTA 7559 ||||| ||||||||| || || ||| |||| ||||| | || | |||| | || Sbjct 95987 ATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATT---TCAGAAAA-CCAATTATA 95932 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| ||||| || ||||| | ||||||| |||||| | ||||||| || | Sbjct 95931 TAATAGTATAATTACAGCACATGCTATACTTATGATATTCTTTATGGTTATGCAGGCATT 95872 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || || | || | ||||||||| | |||| ||||||||||| || Sbjct 95871 AATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCTGATATGGCATT 95812 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||||| | || || |||||||| ||| || |||| ||| Sbjct 95811 CCCAAGATTAAATAACATAAGTTTCTGACTATTACCTCCT 95772 >seq956 Length=1563 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| ||||| || |||||||| | |||||| || | |||||||| ||||| |||| Sbjct 1091 TTCAGGGTGACCGAAGAATCAGAAAAGATGTTGGTATAATATAGGATCACCTCCACCTGC 1150 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 || ||||| || ||||||||||||||||| |||||||| Sbjct 1151 TGTTTCAAAGAATGATGTATTAAAATTTCTATCTGTTAAAAC 1192 >seq431 Length=114165 Score = 95.1 bits (104), Expect = 3e-14 Identities = 184/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| |||| || | ||| || ||||||| ||||| || |||| ||| Sbjct 109909 TTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCG 109850 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || |||| ||| || ||| || | || || |||| ||| | | |||| Sbjct 109849 GTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTG 109790 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || | ||||||||| ||||||| |||| || || | |||||| ||| | || Sbjct 109789 CCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGG 109730 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || ||||| | |||| |||| || || | | || |||||||||||| Sbjct 109729 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 109670 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 |||||||| | |||| | ||| |||||| Sbjct 109669 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAG 109638 >seq482 Length=204 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/197 (72%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 7490 TTTCTATG-ATTA-TAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTG-AGTGGT 7545 ||||| || |||| |||| ||||||||| || || ||| |||| ||||| || Sbjct 13 TTTCTCTGTATTAATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATTTCAG---- 68 Query 7546 AATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTT 7605 ||| |||| | || || ||| ||||| || ||||| | ||||||| |||||| | Sbjct 69 -ATAACCAATTATATAATAGTATAATTACAGCACATGCTATACTTATGATATTCTTTATG 127 Query 7606 GTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCT 7665 |||||||||| | || || ||||| || || | || | ||||||||| | |||| Sbjct 128 GTTATGCCGGCATTAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGA 187 Query 7666 CCTGATATGGCTTTTCC 7682 ||||||||||| || || Sbjct 188 CCTGATATGGCATTCCC 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192515370638984