Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq17 91.5 1e-13
>seq17
Length=653669
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558
||||| || || || || | ||||||||| ||||| || || || ||||| || ||||
Sbjct 343455 TACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCG 343396
Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618
| ||| || ||| |||| | || || | || |||||| |||||||||||||
Sbjct 343395 CGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTA 343336
Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTC 27677
|| || |||| || | |||| |||| ||||| ||||||||||||||||||
Sbjct 343335 ACGCCTGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTC 343277
Query 27678 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 27722
| | |||||| | || ||||| | ||| || || ||||||||
Sbjct 343276 GGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTGGTAAGGAGGGG 343232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369502534509716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |