Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 1e-13 >seq17 Length=653669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558 ||||| || || || || | ||||||||| ||||| || || || ||||| || |||| Sbjct 343455 TACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCG 343396 Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 | ||| || ||| |||| | || || | || |||||| ||||||||||||| Sbjct 343395 CGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTA 343336 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTC 27677 || || |||| || | |||| |||| ||||| |||||||||||||||||| Sbjct 343335 ACGCCTGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTC 343277 Query 27678 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 27722 | | |||||| | || ||||| | ||| || || |||||||| Sbjct 343276 GGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTGGTAAGGAGGGG 343232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369502534509716