Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq456 132 1e-25
seq120 91.5 3e-13
>seq456
Length=89672
Score = 132 bits (146), Expect = 1e-25
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | |||||||||||||| || ||||||||||| |||| | || | || ||
Sbjct 20940 AGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 20881
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || |||||||| || | ||||||||| | | ||| || ||||| |
Sbjct 20880 TCGAGCTGCTTT--CCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGT 20823
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | | |||| ||| ||| || ||||| || ||||
Sbjct 20822 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAG 20763
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || |||||||| ||||| ||||||| ||||||
Sbjct 20762 TCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729
>seq120
Length=409222
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| ||||| || ||||| || ||||||||||| || || || | |||||
Sbjct 293699 GAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATC 293758
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| | || || ||||| || || | |||||| || | | || || ||||| ||
Sbjct 293759 CTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTC 293818
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || ||||| | || | |||| ||| ||| || || || || || ||
Sbjct 293819 CTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGT 293878
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | |||||| ||||||| ||||||
Sbjct 293879 CTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153805484471156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |