Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq120 167 5e-36 seq456 159 7e-34 seq154 147 5e-30 seq409 86.0 1e-11 >seq120 Length=409222 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA-G 282930 ||| |||||||| || || || || || | ||| || || ||||||||||||||| Sbjct 293684 ACCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 293743 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||||||||| | || || || || || || | ||| || || || | Sbjct 293744 CAAG-GTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAG 293802 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||||| || ||||| | || ||| | || || |||||||||| |||| Sbjct 293803 GAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGA 293862 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||||||||| || ||||||||||| ||||| |||||||| Sbjct 293863 CCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || |||||||| || ||||| | || ||| || || ||||||||||| | Sbjct 293912 ACCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGA 293971 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || |||||||| || || ||||| || Sbjct 293972 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 294031 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||| ||||| | || ||| | ||||| ||||| || | |||||| Sbjct 294032 GATACCCTCCTTATCTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 294091 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 294092 CTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || || || |||||||||||||| | Sbjct 294140 ACCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 294199 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || |||||||| || || ||||| || Sbjct 294200 CAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 294259 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | ||||| || || || | ||||| Sbjct 294260 AATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGAC 294319 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || ||||| ||||| || || | ||||| |||| Sbjct 294320 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 294357 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | || || || |||||||||||||| | Sbjct 294424 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 294483 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || |||||||| || || ||||| || Sbjct 294484 CAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 294543 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | ||||| || || || | ||||| Sbjct 294544 AATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGAC 294603 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || || || ||||| || || Sbjct 294604 CTCAAGGGTAATGGTCTTGCCGGT 294627 >seq456 Length=89672 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | || || || |||||||||||||| | Sbjct 20956 ACCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 20897 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| || || |||||| || Sbjct 20896 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 20837 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 20836 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 20777 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 20776 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729 >seq154 Length=370784 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||| ||||| || || || ||||| |||||| Sbjct 211227 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 211168 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 211167 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 211108 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || || || ||||||||||||| ||||| ||||| Sbjct 211107 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 211049 >seq409 Length=335717 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/233 (68%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545 || |||||||| | | |||||||| || | ||| | ||||| || || || ||| | Sbjct 256429 CGACCCCACTTCAGGGCCTTGACAATGGAGTTGAAATTATCGTCCATGAGAATGATCGAG 256370 Query 312546 GCTGCTTCCTTTGCAATGTCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCC 312602 | ||||||||| |||| || ||||| | | ||||| | | |||||||| || | Sbjct 256369 GATGCTTCCTTGGCAACTTCGGTACCGGCAATACCCATGGAGAAGCCGACGTCGGCCGTC 256310 Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662 || || || || || ||||| | || || || || || |||| || || |||| Sbjct 256309 TTGAGCGCAGGAGCATCGTTGGTTCCGTCTCCGGTCACAGCAACGATGTCACCCTTGGCC 256250 Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAAC 312715 || | | ||| ||||| || ||| ||||| ||| || ||||||||||| Sbjct 256249 TTGAGGCGCTTCACCAAGATACGCTTGTCCTCGGGGCTGGAGCGGGCAAGAAC 256197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046725305845544