Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq456 147 2e-30
seq120 123 2e-23
seq154 122 6e-23
>seq456
Length=89672
Score = 147 bits (162), Expect = 2e-30
Identities = 162/214 (76%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| || |||||| ||||||||||| |||| ||| ||| |||| ||
Sbjct 20937 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 20878
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||||| |||||||| || | || | || ||||| |||
Sbjct 20877 AGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 20818
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||||| || |||||||| | || || ||||
Sbjct 20817 ATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCT 20760
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
| |||||||||||||| |||||||| ||||||||
Sbjct 20759 TACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 20726
>seq120
Length=409222
Score = 123 bits (136), Expect = 2e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| || |||||||| |||| || ||| |||| || |||||||| || || |||
Sbjct 293949 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 294008
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
||||| |||||||| || | || | ||| ||||| || |||||| ||| | |
Sbjct 294009 ATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTGACGTTG 294068
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| |||||||| | ||||| ||||| | ||||| ||||| || ||||||||||| |||
Sbjct 294069 TCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACG 294128
Query 44327 AAGATTTGCAT 44337
||||| |||||
Sbjct 294129 AAGATCTGCAT 294139
Score = 114 bits (126), Expect = 9e-21
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|| ||||||||||| |||||| ||||||||||| || | || || || | || ||
Sbjct 293703 ACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGC-CATCCTC 293761
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || || || | |||||||||||| | ||| | ||| ||||| |||
Sbjct 293762 CAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTG 293821
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | || ||||| | || || ||||| | || ||||||||
Sbjct 293822 AATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTT 293881
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || | ||||| |||||||| |||||
Sbjct 293882 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
Score = 111 bits (122), Expect = 1e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||| ||| || || |||||| ||||||||||| ||
Sbjct 294137 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 294196
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || ||| |||| || |||||||| || || |||||||| |||||||| || |
Sbjct 294197 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGG 294256
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | || ||||| ||| ||||| ||||| | | ||||| |||| ||| ||
Sbjct 294257 GGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTC 294316
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
||||| | || || ||||| || || || ||||| ||||
Sbjct 294317 GACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 294357
Score = 107 bits (118), Expect = 1e-18
Identities = 136/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| || |||||| ||||||||||| |||| || ||| |||| ||
Sbjct 294443 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 294502
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || |||||||| |||||||| || | || | || ||||| |||
Sbjct 294503 AGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 294562
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | ||||| |||| ||| || ||||| | ||||| |||||
Sbjct 294563 ATCTTAGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTG 294622
Query 44309 CCCGTGA 44315
|| ||||
Sbjct 294623 CCGGTGA 294629
>seq154
Length=370784
Score = 122 bits (134), Expect = 6e-23
Identities = 138/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| ||| |||| || |||||||| ||||| ||||
Sbjct 211229 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 211170
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 211169 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 211110
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||| ||||| ||||| |||||||||||
Sbjct 211109 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 211052
Query 44326 GAA 44328
|||
Sbjct 211051 GAA 211049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359985854671212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |