Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq456 141 2e-28 seq120 138 3e-27 seq154 118 3e-21 seq431 86.0 2e-11 >seq456 Length=89672 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 20732 CAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 20791 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 20792 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 20851 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| |||||||| || || | || || |||| || ||| || Sbjct 20852 CGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 20911 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 20912 CAGAAGGAGTCTACTCTTCA-CTTG 20935 >seq120 Length=409222 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || || ||||| ||||| ||| |||||| Sbjct 294136 CAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCAGAC 294077 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| || || || || ||||| || |||||||| Sbjct 294076 ACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAGCAG 294017 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||| || || || | || || |||| || ||| | Sbjct 294016 CGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATT 293957 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || |||||||| || Sbjct 293956 CAGAAGGAATCTACTCTGCATCTCGT 293931 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| |||||||| || ||||| || || ||| Sbjct 293908 CAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCGGAC 293849 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || || ||||| || ||||| Sbjct 293848 ACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAGCAG 293789 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || || ||||| || || ||| | || ||||| | || |||| || || ||| | Sbjct 293788 CGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCAC-CTTGAGTGACTACAACAT 293730 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || || ||||| Sbjct 293729 CCAGAAGGAGTCGACGCTTCACCTTGT 293703 Score = 114 bits (126), Expect = 3e-20 Identities = 145/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || |||||||| ||||| || ||| || ||||||| Sbjct 294357 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCG 294298 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || |||||||||||||| || || || || || |||||||| || | | Sbjct 294297 ACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGA 294238 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || ||||| || || || | || || |||| || ||| |||| || | Sbjct 294237 TCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGG 294178 Query 178111 AATCAACACTGCATCTTG 178128 | || || || || |||| Sbjct 294177 AGTCTACCCTCCA-CTTG 294161 Score = 107 bits (118), Expect = 5e-18 Identities = 138/189 (73%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || || ||||| ||||| || ||| || |||||||| ||||| || Sbjct 294629 TCACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGT 294570 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || || || || || |||||||| || | |||||||| || | Sbjct 294569 CTAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTA 294510 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || || || | || || |||| || ||| |||| || || || || || | Sbjct 294509 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTC 294450 Query 178123 ATCTTGTTT 178131 | |||| || Sbjct 294449 A-CTTGGTT 294442 >seq154 Length=370784 Score = 118 bits (130), Expect = 3e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || || ||||| ||||| || ||| ||||| || Sbjct 211048 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 211107 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || || |||||||| || | Sbjct 211108 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTT 211167 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| || || | || || |||| || ||| |||| || Sbjct 211168 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 211227 >seq431 Length=114165 Score = 86.0 bits (94), Expect = 2e-11 Identities = 182/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATT 214182 |||| ||| ||||||||||| |||||| |||||| ||||| |||||||| | Sbjct 109918 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTG 109859 Query 214183 CCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTT 214242 || |||| || || | || ||| || |||||| | |||||||||| | ||| Sbjct 109858 CCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTG 109799 Query 214243 TTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGAC 214301 | | ||| ||| | |||||||| || || | | ||| || ||| |||||| Sbjct 109798 C-GACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCA 109740 Query 214302 ATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGAC 214361 || | || || || |||||||||||| | ||| |||| | || || | | || Sbjct 109739 GTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTAC 109680 Query 214362 TCTTTTCATGAAAAGGTCGGAAGTCCAGA 214390 || |||||||| ||||||| | |||||| Sbjct 109679 CCTCTTCATGAAGAGGTCGGGAATCCAGA 109651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203715221972984