Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq456 141 2e-28
seq120 138 3e-27
seq154 118 3e-21
seq431 86.0 2e-11
>seq456
Length=89672
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| |||||||| || |||
Sbjct 20732 CAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 20791
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 20792 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 20851
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| ||||| |||||||| || || | || || |||| || ||| ||
Sbjct 20852 CGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 20911
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 20912 CAGAAGGAGTCTACTCTTCA-CTTG 20935
>seq120
Length=409222
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || || ||||| ||||| ||| ||||||
Sbjct 294136 CAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCAGAC 294077
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||| || || || || ||||| || ||||||||
Sbjct 294076 ACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAGCAG 294017
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || ||||| || || || | || || |||| || ||| |
Sbjct 294016 CGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATT 293957
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || |||||||| ||
Sbjct 293956 CAGAAGGAATCTACTCTGCATCTCGT 293931
Score = 114 bits (126), Expect = 3e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||| | || ||||| |||||||| || ||||| || || |||
Sbjct 293908 CAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCGGAC 293849
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| |||||||||||||| || || || ||||| || |||||
Sbjct 293848 ACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAGCAG 293789
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| || || ||||| || || ||| | || ||||| | || |||| || || ||| |
Sbjct 293788 CGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCAC-CTTGAGTGACTACAACAT 293730
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||| || || || || || || |||||
Sbjct 293729 CCAGAAGGAGTCGACGCTTCACCTTGT 293703
Score = 114 bits (126), Expect = 3e-20
Identities = 145/198 (73%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || || || || |||||||| ||||| || ||| || |||||||
Sbjct 294357 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCG 294298
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| ||||| || |||||||||||||| || || || || || |||||||| || | |
Sbjct 294297 ACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGA 294238
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || || ||||| || || || | || || |||| || ||| |||| || |
Sbjct 294237 TCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGG 294178
Query 178111 AATCAACACTGCATCTTG 178128
| || || || || ||||
Sbjct 294177 AGTCTACCCTCCA-CTTG 294161
Score = 107 bits (118), Expect = 5e-18
Identities = 138/189 (73%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || || ||||| ||||| || ||| || |||||||| ||||| ||
Sbjct 294629 TCACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGT 294570
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| || || || || || |||||||| || | |||||||| || |
Sbjct 294569 CTAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTA 294510
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || || || | || || |||| || ||| |||| || || || || || |
Sbjct 294509 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTC 294450
Query 178123 ATCTTGTTT 178131
| |||| ||
Sbjct 294449 A-CTTGGTT 294442
>seq154
Length=370784
Score = 118 bits (130), Expect = 3e-21
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || || ||||| ||||| || ||| ||||| ||
Sbjct 211048 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 211107
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || || || |||||||| || |
Sbjct 211108 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTT 211167
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| || || | || || |||| || ||| |||| ||
Sbjct 211168 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 211227
>seq431
Length=114165
Score = 86.0 bits (94), Expect = 2e-11
Identities = 182/269 (68%), Gaps = 2/269 (1%)
Strand=Plus/Minus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATT 214182
|||| ||| ||||||||||| |||||| |||||| ||||| |||||||| |
Sbjct 109918 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTG 109859
Query 214183 CCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTT 214242
|| |||| || || | || ||| || |||||| | |||||||||| | |||
Sbjct 109858 CCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTG 109799
Query 214243 TTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGAC 214301
| | ||| ||| | |||||||| || || | | ||| || ||| ||||||
Sbjct 109798 C-GACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCA 109740
Query 214302 ATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGAC 214361
|| | || || || |||||||||||| | ||| |||| | || || | | ||
Sbjct 109739 GTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTAC 109680
Query 214362 TCTTTTCATGAAAAGGTCGGAAGTCCAGA 214390
|| |||||||| ||||||| | ||||||
Sbjct 109679 CCTCTTCATGAAGAGGTCGGGAATCCAGA 109651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203715221972984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |