Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq456 158 1e-33
seq154 147 2e-30
seq120 129 5e-25
>seq456
Length=89672
Score = 158 bits (174), Expect = 1e-33
Identities = 153/195 (78%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||||||||||||||| |||| ||||||||||| || |||||
Sbjct 20920 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 20861
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAAC 41788
||||||||||| ||||| | ||| | || |||||||||| ||| || ||| ||
Sbjct 20860 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 20801
Query 41789 GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848
| || | |||||| ||||||||||| | || || || |||||||| || |||||
Sbjct 20800 GTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTG 20743
Query 41849 ACGAAAATCTGCATG 41863
||||| |||||||||
Sbjct 20742 ACGAAGATCTGCATG 20728
>seq154
Length=370784
Score = 147 bits (162), Expect = 2e-30
Identities = 144/184 (78%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 211229 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 211170
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| |||||| ||||| | ||||| || |||||||||| ||| || ||| || |
Sbjct 211169 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 211110
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 211109 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 211052
Query 41851 GAAA 41854
||||
Sbjct 211051 GAAA 211048
>seq120
Length=409222
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || |||||||| || |||||||||||||| ||||||||
Sbjct 293913 CCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAC 293972
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||| ||||| |||| |||||| ||||| | |||
Sbjct 293973 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 294032
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||| | | ||| | || | | ||| | | | ||||| ||| || ||
Sbjct 294033 ATACCCTCCTTAT-CTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 294091
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 294092 CTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462298013163200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |