Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq653 104 5e-17
>seq653
Length=48578
Score = 104 bits (114), Expect = 5e-17
Identities = 307/465 (66%), Gaps = 10/465 (2%)
Strand=Plus/Minus
Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CC 230238
||||||| ||||||| | |||||| || || | || ||||| || |||| ||
Sbjct 5923 AGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT-TGCGTCC 5865
Query 230239 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 230298
||||||||||| ||| ||| | ||||||||||| | || || || |||||
Sbjct 5864 ATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATC 5805
Query 230299 AGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAA 230357
||||||||| || || || || | || || || | | || || | || || |
Sbjct 5804 TCTCGCGACGAAGGACTGCA-CACCGATTTTGCCTGCCTGCTCTACTCCCACCTGAAGCA 5746
Query 230358 CAAGCTACCATTCGAGACGGTCAAAC---AAATCATTACAGAAGCAGTTGAAAACGAAAA 230414
| | ||| | || ||||| | | |||||| || || || | | || |
Sbjct 5745 CCGCC--CCAG-CAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCA 5689
Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGG 230474
||||||| | || ||| | || || | || | || ||||| | | || |||
Sbjct 5688 GGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAA 5629
Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534
|||||||| ||||| || |||||||| | | ||| | || || | || || || ||
Sbjct 5628 GCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAATGAAAAGGTCTA 5569
Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594
||| || | || ||||||| ||||||||| ||| || ||| || |||||||||||
Sbjct 5568 CAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTT 5509
Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
||| || ||||||||| || || |||| | |||| || |||||
Sbjct 5508 CTTTGAGAAGCGTGTCGCCGATTACCAGAAGGCTGGCGTCATGAA 5464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057798831391910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |