Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq653 104 5e-17 >seq653 Length=48578 Score = 104 bits (114), Expect = 5e-17 Identities = 307/465 (66%), Gaps = 10/465 (2%) Strand=Plus/Minus Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CC 230238 ||||||| ||||||| | |||||| || || | || ||||| || |||| || Sbjct 5923 AGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT-TGCGTCC 5865 Query 230239 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 230298 ||||||||||| ||| ||| | ||||||||||| | || || || ||||| Sbjct 5864 ATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATC 5805 Query 230299 AGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAA 230357 ||||||||| || || || || | || || || | | || || | || || | Sbjct 5804 TCTCGCGACGAAGGACTGCA-CACCGATTTTGCCTGCCTGCTCTACTCCCACCTGAAGCA 5746 Query 230358 CAAGCTACCATTCGAGACGGTCAAAC---AAATCATTACAGAAGCAGTTGAAAACGAAAA 230414 | | ||| | || ||||| | | |||||| || || || | | || | Sbjct 5745 CCGCC--CCAG-CAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCA 5689 Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGG 230474 ||||||| | || ||| | || || | || | || ||||| | | || ||| Sbjct 5688 GGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAA 5629 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 |||||||| ||||| || |||||||| | | ||| | || || | || || || || Sbjct 5628 GCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAATGAAAAGGTCTA 5569 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 ||| || | || ||||||| ||||||||| ||| || ||| || ||||||||||| Sbjct 5568 CAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTT 5509 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||| || ||||||||| || || |||| | |||| || ||||| Sbjct 5508 CTTTGAGAAGCGTGTCGCCGATTACCAGAAGGCTGGCGTCATGAA 5464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057798831391910