Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq147 190 2e-43 >seq147 Length=155241 Score = 190 bits (210), Expect = 2e-43 Identities = 510/773 (66%), Gaps = 64/773 (8%) Strand=Plus/Minus Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604 ||||| ||||| || | | || |||| |||||| | | ||||||||||| || | Sbjct 45936 CATCTTCATGGCAATCGTCTTATGCGGGTCGTAGCCTTTGACGACAAAGTCCTCCACCTT 45877 Query 145605 GAAGTCATCTATGTCCTCCACCC-GCCTCA--GG--ATCCTGAGCCTGGGAAAGGGCCGG 145659 | | || ||| || ||||| ||||| || ||| | | ||||||| | | Sbjct 45876 CCACCCGTCAATG--CTACACCCTGCCTCCTTGGTCATCTCCAACAGGGGAAAGTCTCTG 45819 Query 145660 GGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTC 145718 || ||| | || | ||| | |||||| | |||||||||| ||| || ||||||||||| Sbjct 45818 GG-CTCGCGCTCCAACTGCACCTTCAGCGCGTCCACGTGGTCGAGATACACGTGCGCGTC 45760 Query 145719 CCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGT 145778 |||| |||||| | | | || || ||| | | | || | ||| | ||| Sbjct 45759 GCCCATGACGTGTGTCAGGCTTCCTGGAATAAGGTCGCACGCGCGCGCAATCATATGGGT 45700 Query 145779 CAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTG 145838 ||||| | ||| ||||| |||||||| ||||| ||||| |||||||| | |||||||| Sbjct 45699 GAGCAGCGCGTAACTGGCAATGTTGAATGGCACTCCCAGGCCCATGTCACAGGAGCGCTG 45640 Query 145839 GTACAGCTGGCAGGAGAG---------------CTCC-CCGCC----------------- 145865 ||||||||||||| | |||| ||||| Sbjct 45639 GTACAGCTGGCAGTGCAAATGTCCCTTCGGCTTCTCCTCCGCCGAGGCGTTTCGCGATCT 45580 Query 145866 ------CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCA 145918 || ||||| ||||| ||| | | |||||| ||||| || ||||| || Sbjct 45579 GGGGTACGAGACGTAAAACTGAGCAAAC-ATGTGGCACGGCGGGAGCGCCATCTTCTTCA 45521 Query 145919 GGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGA 145975 ||||||| |||||||| ||| | || | || ||| || ||| |||||| |||||| Sbjct 45520 GGTCCGCGGGGTTCCACGCGCTCAGCAGGA---TCCGGCGGTCGTACGGGTTCGTCTTGA 45464 Query 145976 TCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGT 146035 | || | || || ||||| |||||||| ||| || || ||||||| || Sbjct 45463 GTTTTTGGATGACCTCGGCCAGTTGGTCAACGCCCTGGCCCGTATAGTCCGTCTTGGCGT 45404 Query 146036 CCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGG 146095 | |||||| |||| || ||||||| ||| ||||| ||||| ||||| || || || ||| Sbjct 45403 CGACGTACTCGGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGA 45344 Query 146096 GCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGA 146155 || | ||| || ||| | | | |||| || || || || ||||| ||||||||| Sbjct 45343 CTTCGCGGTGGGAAAGGCCGACACTGTCGAGAAACTCGCGCGAGCCGTTTCCGTCCCAGA 45284 Query 146156 TCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTC--CGTGGACCCCCTGATGAACCAG 146211 |||||| ||| | |||| || | || ||| | |||| ||| || ||||||| Sbjct 45283 TCTTGATGCCGGCGTCGCTCAG-GGGCA---GAGACGACGTGCTGCCCGCGACGAACCAG 45228 Query 146212 AGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 |||||||| ||| ||| | | | |||||| | || ||||| || ||||| Sbjct 45227 AGCAGCTCGGCGACGACGGCGCGCAGGAAGACGCGTTTTGTGGTGAGAAGGGG 45175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590063102842280