Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq653 179 4e-40
seq137 150 2e-31
seq126 114 1e-20
seq1 114 1e-20
>seq653
Length=48578
Score = 179 bits (198), Expect = 4e-40
Identities = 211/285 (74%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| |||||||||||||| |||||||||| ||||||| | ||| ||
Sbjct 6382 ATTTGGCAAATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTG 6323
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| ||||||| | | || ||||| ||||| ||||||
Sbjct 6322 TCCAAGGACCTTCACGACTGGAATAACAAGATTAACGACGACGAGAAGTTCTTCATCTCT 6263
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | || ||||| ||||| ||| ||||| || ||||||||||| ||||| || ||
Sbjct 6262 CACATCCTCGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAACGC 6203
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| || || ||||| |||||||||| |||||||||||||| |||||| |||
Sbjct 6202 TTCAGCGGTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGATG 6143
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|| ||| | ||||| || | ||||| |||||||| ||||||
Sbjct 6142 GAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTAC 6098
Score = 176 bits (194), Expect = 5e-39
Identities = 273/385 (71%), Gaps = 4/385 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGC-AGAGAGGCCGCCTTCGGCGAGCGC 117040
|||||||||| ||||| || |||||| || | ||| || || | |||| ||||
Sbjct 5977 AGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGA-AGTCCACTTTCGCTCAGCGT 5919
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
|| || |||||||| || || |||||| ||||||| || || || || |||| |||
Sbjct 5918 CTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTT 5859
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| || || |||||||| |||||||| ||| ||| || |||||||| |
Sbjct 5858 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGC 5799
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
||||| || ||||| ||| |||||||| |||| | | || || ||| || ||
Sbjct 5798 GACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCACCTGAAGCACCGCCCC 5739
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | | | || |||| ||| | |||||| ||| || |||||| ||||||
Sbjct 5738 AGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCCTC 5679
Query 117281 ACCGAAGCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
||||| || ||||| ||| |||| || || | |||| | | ||| ||| |||||
Sbjct 5678 ACCGAGGCTCTGCC-CTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACAT 5620
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTG 117364
|| || || |||||| | ||||||
Sbjct 5619 TGAATTTGTGGCCGACCGTCTGCTG 5595
>seq137
Length=159453
Score = 150 bits (166), Expect = 2e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 53140 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 53199
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 53200 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 53259
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| ||||| || |||| |||||||| ||||||||||
Sbjct 53260 CAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 53319
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||| |||| || || || ||| ||||| || | || || |||
Sbjct 53320 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGGC 53370
>seq126
Length=166795
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| |||| || || || | |||| |
Sbjct 82415 TTCGTTAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCGGACACGATC 82474
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| | |||||||| || |
Sbjct 82475 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 82534
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || ||||| || |||| ||||||||| |||||||||||||||||||
Sbjct 82535 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 82594
Query 40879 G 40879
|
Sbjct 82595 G 82595
>seq1
Length=623116
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | || ||||| || ||||| | || ||||| | |
Sbjct 264954 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 265013
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| || || | ||||| |||||||| || | ||||||
Sbjct 265014 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 265073
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| ||||| ||| |||| || | || ||||| ||| ||||||
Sbjct 265074 CAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACAAC 265133
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | ||||||||
Sbjct 265134 ATCCAGAAGGAGTCGACGCTGCA 265156
Score = 113 bits (124), Expect = 5e-20
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| || || |||||||| |||| || || || |||| | | | | | |||||
Sbjct 264520 TCACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGT 264579
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| |||| ||||| ||||| ||||| | |||||||| || || || | ||| ||||
Sbjct 264580 CCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCA 264639
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || || | |||||||||| ||||||||||||||| ||||| |||| || |
Sbjct 264640 AGCAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCACTCTCC 264699
Query 40892 ATCTAGT 40898
| || ||
Sbjct 264700 ACCTCGT 264706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515207240474320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |