Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 165 7e-36 seq137 107 2e-18 seq126 89.7 4e-13 seq298 84.2 2e-11 >seq1 Length=623116 Score = 165 bits (182), Expect = 7e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | | ||||||||| | |||||||| || ||||||||||||||| Sbjct 264954 TACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGG 264895 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| |||||| || |||||||| ||| |||||||||||||||| || |||| Sbjct 264894 AGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAG 264835 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| ||| || || || | |||| ||| |||| ||||| Sbjct 264834 GAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGA 264775 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || |||||||||||||| || || ||||||||||| Sbjct 264774 CCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||||||| | || || |||||| Sbjct 265163 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCCTC 265104 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| |||| ||||| ||||| || ||||| |||||||||||||| Sbjct 265103 CAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 265044 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | |||||| || | || | ||| || Sbjct 265043 GATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTCTT 264984 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || ||||| ||||| Sbjct 264983 GCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || ||||| |||||||| ||||| | ||||| |||||| ||||| Sbjct 264701 GTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCAAGCTG 264642 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || || |||||||| |||||||| || ||||||||||| ||| || Sbjct 264641 CTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 264582 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||| || | | ||| ||||||| || | || || ||||| Sbjct 264581 GGACTTGACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 264522 >seq137 Length=159453 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| ||| || ||||| || Sbjct 53352 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 53293 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| | |||||||| ||||| || |||||||||||||| Sbjct 53292 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 53233 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | || Sbjct 53232 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 53173 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || || ||||||||| Sbjct 53172 CTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 53139 >seq126 Length=166795 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| ||||| ||||| || |||||| |||| Sbjct 82593 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 82534 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| ||||| || |||||||||||||| || || || || | ||| Sbjct 82533 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 82474 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||||| | ||| ||||||| ||| | || || || ||||| || || || || Sbjct 82473 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 82415 >seq298 Length=101239 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 133224 TTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGT 133283 ||||| || || |||||||| ||||||||||| | | || | || || ||| | ||| Sbjct 54888 TTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGT 54947 Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343 ||||| | ||||||||||| || ||||||| || | || ||||||||| || || Sbjct 54948 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACG 55007 Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCAC-TGCAATTCGTTCCAGTCCCA 133402 | || | ||| | ||||||| || || || ||| | | ||| || ||||||||| Sbjct 55008 AGCAGACTGTTGCGGACGCCGTGCTGCTTGAT-CTGCTCTTTCAAAGAGTCCCAGTCCCA 55066 Query 133403 CAG 133405 || Sbjct 55067 GAG 55069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820581469044