Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq298 138 2e-27 seq305 107 4e-18 seq51 95.1 3e-14 >seq298 Length=101239 Score = 138 bits (152), Expect = 2e-27 Identities = 610/951 (64%), Gaps = 26/951 (3%) Strand=Plus/Minus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 ||||||| ||||| | || || | ||| | | ||| | ||||| || |||||| Sbjct 56404 GCGATTGTCTACGACCGTGACTTCAACTACCAATACTTCGGCTTCAAGACCTTGGAGAGG 56345 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 ||||| |||||||| || ||||||||||| | || | || |||||| | ||||| Sbjct 56344 TCGTACCTCCTCAAGATCGATGGCAAGATTGCCGAGAGGCCGCAACACATGATTATGCGT 56285 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACGTACACCGGA 248967 || ||||| || ||| || ||||| | ||| |||| |||||||||||| | Sbjct 56284 GTCGCTGTTGGCATTTG---GGGTGACAACGTTGAGCGCGTTATCGAGACGTACAACTTG 56228 Query 248968 ATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAA 249026 ||| | | | ||| | | || |||||| | || || || ||||||||||| ||| | Sbjct 56227 ATGTCGAGCAAGCT-GTTCACCCATGCCTCGCCCACTCTGTTCAACGCCGGCACCCCTCA 56169 Query 249027 CAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTA 249086 || ||| |||||||| || | | ||| | || ||||| |||| ||||| || Sbjct 56168 GGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGACTCCATCGAAGGCATCTA 56109 Query 249087 TGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTC 249143 ||||| || | ||||| || | |||||| || | || || || ||||||||| Sbjct 56108 CGACACCCTCA---AGACGTGCGCCATGATTTCCAAGATGGCTGGAGGCATCGGTCTCAA 56052 Query 249144 CGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGG 249203 |||| ||| || | | || || |||||| || || || || | | || Sbjct 56051 CGTCCATCGCATTCGTTCCACTGGCTCCTACATCGCGGGCACCAACGGAACCTCCAACGG 55992 Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG 249263 | |||| || | || || ||| | |||||| | | || |||| | ||| Sbjct 55991 TGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATGTCGACCAAGGCGGTAA 55932 Query 249264 C---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTT 249320 | ||| || | |||||||| || | || |||||||||||| | || ||||| Sbjct 55931 CAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTT 55872 Query 249321 CCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGG 249380 ||| || | |||||| ||||||| ||| | | || || || || ||| || Sbjct 55871 CCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGCGATCTTTTCCTCGC 55812 Query 249381 CCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCT 249440 ||| ||| || | || | |||||| | ||| || |||| || ||||| || | Sbjct 55811 CCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACGGTGACTGGACTCTCAT 55752 Query 249441 TTCTCCGTCCGA-CGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCT 249499 | ||| ||| || |||| |||| ||| |||||| || || || | Sbjct 55751 GTGTCCCAACGAGTGCTCCGG-CCTCGCCGACTGTTACGGCGAGGAGTTTGAGGCGTTGT 55693 Query 249500 ATAAGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT-TTTT 249555 | |||| ||||| | | || | | ||||||| |||||||| | || || | | Sbjct 55692 ACGAGAAGTACGAGCGCGAGGGTAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTGTGGT 55633 Query 249556 GCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGC 249614 || | | ||| | |||| ||||| ||| || | || ||| ||| ||||| Sbjct 55632 ACG-CCATCCTTGAGGCGCAGACGGAGAC-GGGCAACCCCTTCATGCTGTACAAGGACGC 55575 Query 249615 GTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGC 249674 |||| |||||| ||||| | | || |||||||||||| || || || || | Sbjct 55574 CGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAACCTTTGCAC 55515 Query 249675 AGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || | || | |||||| | || ||| ||||||||||||||||||| Sbjct 55514 TGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGC 55464 >seq305 Length=100002 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260 |||||| || |||||| || | || || |||||||||||| ||||||| || ||||| Sbjct 79129 CTGTCCACCCTTCAAGATCATCATTCTTGACGAGGCGGACTCCATGACCCAGGATGCGCA 79070 Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320 | |||||||||||| || |||||||| || | | || || || || || | || Sbjct 79069 GAGCGCCCTCCGCCGGACAATGGAGACTTACAGCAAAATCACCCGCTTCTGTCTCATCTG 79010 Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||| || || |||||||| |||||| || ||| ||| |||||| || |||| Sbjct 79009 CAACTATGTCACGCGGATCATCGACCCGCTCGCCAGTCGTTGCAGCAAGTTCCGCTTCA 78951 >seq51 Length=244531 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| | || || |||| || || || || || |||||||| || |||||||| Sbjct 75614 CTACCCCATCTCCTCCTCTACGGGCCCCCGGGCACGGGAAAGACGTCCACGATCCTGGCC 75555 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 || || ||| | | |||| | |||||| || | || |||||||| |||||| Sbjct 75554 CTCGCGAGAAGAATCTACGGCGCTGAAAACATGCGACAAATGGTCCTCGAGCTCAACGCT 75495 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 || ||||| ||||| | ||||| || ||||| ||||||||||||| Sbjct 75494 TCCGACGACCGCGGCATCGACGTGGTGCGCGAGCAGATCAAGACTTT 75448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073740852077376