Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq298 138 2e-27
seq305 107 4e-18
seq51 95.1 3e-14
>seq298
Length=101239
Score = 138 bits (152), Expect = 2e-27
Identities = 610/951 (64%), Gaps = 26/951 (3%)
Strand=Plus/Minus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
||||||| ||||| | || || | ||| | | ||| | ||||| || ||||||
Sbjct 56404 GCGATTGTCTACGACCGTGACTTCAACTACCAATACTTCGGCTTCAAGACCTTGGAGAGG 56345
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
||||| |||||||| || ||||||||||| | || | || |||||| | |||||
Sbjct 56344 TCGTACCTCCTCAAGATCGATGGCAAGATTGCCGAGAGGCCGCAACACATGATTATGCGT 56285
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACGTACACCGGA 248967
|| ||||| || ||| || ||||| | ||| |||| |||||||||||| |
Sbjct 56284 GTCGCTGTTGGCATTTG---GGGTGACAACGTTGAGCGCGTTATCGAGACGTACAACTTG 56228
Query 248968 ATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAA 249026
||| | | | ||| | | || |||||| | || || || ||||||||||| ||| |
Sbjct 56227 ATGTCGAGCAAGCT-GTTCACCCATGCCTCGCCCACTCTGTTCAACGCCGGCACCCCTCA 56169
Query 249027 CAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTA 249086
|| ||| |||||||| || | | ||| | || ||||| |||| ||||| ||
Sbjct 56168 GGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGACTCCATCGAAGGCATCTA 56109
Query 249087 TGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTC 249143
||||| || | ||||| || | |||||| || | || || || |||||||||
Sbjct 56108 CGACACCCTCA---AGACGTGCGCCATGATTTCCAAGATGGCTGGAGGCATCGGTCTCAA 56052
Query 249144 CGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGG 249203
|||| ||| || | | || || |||||| || || || || | | ||
Sbjct 56051 CGTCCATCGCATTCGTTCCACTGGCTCCTACATCGCGGGCACCAACGGAACCTCCAACGG 55992
Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG 249263
| |||| || | || || ||| | |||||| | | || |||| | |||
Sbjct 55991 TGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATGTCGACCAAGGCGGTAA 55932
Query 249264 C---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTT 249320
| ||| || | |||||||| || | || |||||||||||| | || |||||
Sbjct 55931 CAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTT 55872
Query 249321 CCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGG 249380
||| || | |||||| ||||||| ||| | | || || || || ||| ||
Sbjct 55871 CCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGCGATCTTTTCCTCGC 55812
Query 249381 CCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCT 249440
||| ||| || | || | |||||| | ||| || |||| || ||||| || |
Sbjct 55811 CCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACGGTGACTGGACTCTCAT 55752
Query 249441 TTCTCCGTCCGA-CGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCT 249499
| ||| ||| || |||| |||| ||| |||||| || || || |
Sbjct 55751 GTGTCCCAACGAGTGCTCCGG-CCTCGCCGACTGTTACGGCGAGGAGTTTGAGGCGTTGT 55693
Query 249500 ATAAGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT-TTTT 249555
| |||| ||||| | | || | | ||||||| |||||||| | || || | |
Sbjct 55692 ACGAGAAGTACGAGCGCGAGGGTAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTGTGGT 55633
Query 249556 GCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGC 249614
|| | | ||| | |||| ||||| ||| || | || ||| ||| |||||
Sbjct 55632 ACG-CCATCCTTGAGGCGCAGACGGAGAC-GGGCAACCCCTTCATGCTGTACAAGGACGC 55575
Query 249615 GTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGC 249674
|||| |||||| ||||| | | || |||||||||||| || || || || |
Sbjct 55574 CGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAACCTTTGCAC 55515
Query 249675 AGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725
|| | || | |||||| | || ||| |||||||||||||||||||
Sbjct 55514 TGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGC 55464
>seq305
Length=100002
Score = 107 bits (118), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260
|||||| || |||||| || | || || |||||||||||| ||||||| || |||||
Sbjct 79129 CTGTCCACCCTTCAAGATCATCATTCTTGACGAGGCGGACTCCATGACCCAGGATGCGCA 79070
Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320
| |||||||||||| || |||||||| || | | || || || || || | ||
Sbjct 79069 GAGCGCCCTCCGCCGGACAATGGAGACTTACAGCAAAATCACCCGCTTCTGTCTCATCTG 79010
Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
|||||| || || |||||||| |||||| || ||| ||| |||||| || ||||
Sbjct 79009 CAACTATGTCACGCGGATCATCGACCCGCTCGCCAGTCGTTGCAGCAAGTTCCGCTTCA 78951
>seq51
Length=244531
Score = 95.1 bits (104), Expect = 3e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|| || ||| | || || |||| || || || || || |||||||| || ||||||||
Sbjct 75614 CTACCCCATCTCCTCCTCTACGGGCCCCCGGGCACGGGAAAGACGTCCACGATCCTGGCC 75555
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120
|| || ||| | | |||| | |||||| || | || |||||||| ||||||
Sbjct 75554 CTCGCGAGAAGAATCTACGGCGCTGAAAACATGCGACAAATGGTCCTCGAGCTCAACGCT 75495
Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167
|| ||||| ||||| | ||||| || ||||| |||||||||||||
Sbjct 75494 TCCGACGACCGCGGCATCGACGTGGTGCGCGAGCAGATCAAGACTTT 75448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073740852077376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |