Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq298 372 3e-98 seq1 109 5e-19 seq653 105 6e-18 seq137 96.9 3e-15 >seq298 Length=101239 Score = 372 bits (412), Expect = 3e-98 Identities = 1232/1899 (65%), Gaps = 57/1899 (3%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| |||||||| ||||| |||| | || || | || || || || || ||||| Sbjct 54537 TCTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATT 54596 Query 22163 CCCGTCTTCAGACCCATCTTCCA---CGCGTAAAAATGTATCGACGTCAATTTTCCATAA 22219 || ||||||||||||| |||||| |||| || || || || | || || Sbjct 54597 CCAGTCTTCAGACCCAGCTTCCAGCCCGCG---AAGTGCATGCTGGTGATCTTGCCCATG 54653 Query 22220 CTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG 22279 |||| | ||||| | |||| || ||| ||| ||||| || || || || ||| Sbjct 54654 GTCGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCG 54713 Query 22280 GCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339 || ||||| | || | |||||| || || ||||| || |||||||||| | || Sbjct 54714 GCAGCCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTG 54773 Query 22340 ATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399 | ||| || || ||| | || | ||| || || | ||||| || Sbjct 54774 ACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTC 54833 Query 22400 TTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACC 22459 || || ||| ||||| || || || | || |||| || | || || Sbjct 54834 TTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAGCCAGGGATTGACG 54893 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || || |||||||| | | |||||||| ||||| |||||||| ||| | |||||||| Sbjct 54894 ACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAG 54953 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 | || ||||| ||||| ||||| | || || || ||||| || || | || || Sbjct 54954 CACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGA 55013 Query 22580 GAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGA---CCAGTCCCACA 22634 ||| | | |||||||| |||| | | ||||| || || ||||||||| | Sbjct 55014 CTGTTGCGGACGCCGTGCTGCTTGA---TCTGCTCTTT--CAAAGAGTCCCAGTCCCAGA 55068 Query 22635 GATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCG----CC 22690 | || || ||| | || ||||||||| ||||| || | | || || | | Sbjct 55069 GGTCAGAGGGCTTGAC---GTCCCACATGTCGTACTGGAGAATCCC----CTTGGAAACA 55121 Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTC 22749 ||| ||||||||||| ||| | || | | | ||| ||| | |||| | Sbjct 55122 GGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTG-GCAGGACATGGT 55180 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGC-GA 22805 | ||| ||| || || ||||||||||| |||||||| | || || | || || Sbjct 55181 GAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGA 55240 Query 22806 CGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATAC 22865 | ||| | ||||| |||| | |||||| || || | ||||| ||||| | || Sbjct 55241 C----TCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGAC 55296 Query 22866 CGATCGGTCGGTTTTTCAGATTCGACACTTTT----GCCTCGGGCAAAGGATACCAATTC 22921 |||| || || | || || || || ||||| | | ||| || || Sbjct 55297 CGATGGGGCGATGGCGCATGTTG----CTGTTACGGGCCTCCTGAACAGGGTAGTGGTTG 55352 Query 22922 GAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCA 22981 || || | ||||||||||| | | |||| | || | | Sbjct 55353 ACGTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGG 55412 Query 22982 AAGTCGTAAACGCC--CGATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATT 23037 ||||| || ||| || ||||| |||| || || | ||| | || || || || Sbjct 55413 AAGTCATAGGTGCCTTCG-TTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTT 55471 Query 23038 GCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACA 23097 ||| ||||| ||||| || | || |||||| | ||||| || || || ||| | Sbjct 55472 GCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCT 55531 Query 23098 CTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCAT 23157 || || || | || |||||||||| || || ||| | |||||||| ||||| Sbjct 55532 GCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCAT 55591 Query 23158 GTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTG 23217 | | || |||||||||| ||||| ||| | ||| || ||||| |||| || | Sbjct 55592 GAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTT 55651 Query 23218 AACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGG 23276 | ||| || ||| || || ||||||||| | ||||||||| ||||| || Sbjct 55652 GATG-GTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCT 55710 Query 23277 CACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGT 23336 | |||||||||||||| ||||||| | | | |||||||||||| |||| || Sbjct 55711 CGCCGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGT 55770 Query 23337 CATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396 || || || | |||| || ||||| || ||||| || ||| ||| || ||||||| Sbjct 55771 TCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGG 55830 Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456 | || |||||||| |||||| |||||| | ||| | || || || || || || | Sbjct 55831 CACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGT 55890 Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516 |||| ||||| ||||| | ||| || || || |||| ||| || ||||| || ||||| | Sbjct 55891 GCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACAT 55950 Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576 | || || ||||||||| | || | ||||| || |||| ||||||||| | ||| Sbjct 55951 AGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGG 56010 Query 23577 CGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636 |||||| | || || | | |||| | || |||| || ||| |||||||| Sbjct 56011 TGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAG 56070 Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696 || || || ||||| ||||| || || |||||||||||||| |||||| ||||| Sbjct 56071 CCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCT 56130 Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756 | || | |||| | ||| |||||||||| ||| || | || || |||| ||||| Sbjct 56131 CCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACA 56190 Query 23757 GTGTCGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGC 23814 | || || ||| || || | || | | ||||||| | |||||||| ||||| | Sbjct 56191 GAGTGGGCGAGGCATGGGTGAACAGCTTGC--TCGACATCAAGTTGTACGTCTCGATAAC 56248 Query 23815 GGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCT 23874 | |||| || || || || || | ||||| ||||| ||||||| ||| || || Sbjct 56249 GCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCT 56308 Query 23875 CTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 |||| | | ||| | || |||| || || || | | || || || || || || Sbjct 56309 CTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAA 56368 Query 23935 ATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || | ||||| |||||||| |||| || || ||||| Sbjct 56369 GTATTGGTAGTTGAAGTCACGGTCGTAGACAATCGCCGA 56407 >seq1 Length=623116 Score = 109 bits (120), Expect = 5e-19 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| ||||| |||||||| | || || || | || Sbjct 264954 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 265013 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || ||| || | | ||||||||| ||| | || || ||| Sbjct 265014 GACACCATCGACAATGTGAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGAC 265070 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| ||||| || ||||||||||| |||||||| || | || | |||||| Sbjct 265071 CAGCAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTAC 265130 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || |||| || Sbjct 265131 AACATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 265165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || || || || ||||| |||| ||||| | ||||| | |||| | ||||| Sbjct 264522 ACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGTCC 264581 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||| || | || |||||||||||||| || || ||||||||||| Sbjct 264582 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 264641 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || || | || | ||||| || ||||| ||||| ||||| ||||| || Sbjct 264642 CAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCACTCTCCAC 264701 Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||| | ||| | || |||| Sbjct 264702 CTCGTCCTTCGTCTGCGTGGTGGTA 264726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| ||||| || || || | || || || | || Sbjct 264726 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATTACTTTGGAGGTCGAGTCTTCG 264785 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| || || ||||||||| || | || || |||||| Sbjct 264786 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 264845 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || ||||| | || || | || | |||||| ||| Sbjct 264846 CAGCGTCTCATCTTCGCCGGAAAACAACTTGAGGATGGTCGCACGCTCTCCGATTACAAC 264905 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||| | || |||| || Sbjct 264906 ATTCAGAAGGAGTCTACTTTGCACTTGGTGCT 264937 >seq653 Length=48578 Score = 105 bits (116), Expect = 6e-18 Identities = 202/295 (68%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||||| ||| || | ||| || Sbjct 6382 ATTTGGCAAATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTG 6323 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTT--ATTA 57684 || ||||| || ||| ||| || | | || || | ||||| || | || Sbjct 6322 TCCAAGGACCTTCACGACTGGAATAACAAGATTAACGA--CGACGAGAAGTTCTTCATCT 6265 Query 57685 AACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAA 57744 ||| | | || || ||||| || || || |||||||| |||||||| |||| ||| Sbjct 6264 CTCACATCCTCGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAAC 6205 Query 57745 GATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 | || ||||| || || | |||||| | ||||| ||||| || || | | Sbjct 6204 GCTTCAGCGGTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGA 6145 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | |||||| | || || || | ||||| || ||||||||||||||| | ||||| Sbjct 6144 TGGAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGA 6090 >seq137 Length=159453 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 53135 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 53194 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 53195 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 53254 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| | || ||||| ||||| ||| | || ||| || || ||| | Sbjct 53255 ACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACT 53314 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423 | ||||| || || || || || || || ||||| || | ||| | || ||| ||| Sbjct 53315 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGGCAAGA 53374 Query 31424 AGCG 31427 |||| Sbjct 53375 AGCG 53378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756052647440