Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq298 91.5 3e-13 >seq298 Length=101239 Score = 91.5 bits (100), Expect = 3e-13 Identities = 111/150 (74%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || |||||||||||||||| |||||| ||||| | ||||| ||||| | ||| Sbjct 55679 CTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCA 55738 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCCATGAAGAG 94523 ||||| ||| ||||| || | ||| | || |||| ||||||| ||||||||| Sbjct 55739 CTCGTTGGGACACATGAGAGTCCA---GTCACCGTTCTTCTCGACTCTCTTCATGAAGAG 55795 Query 94524 ATCAGATACCCAGATAGCTGGGAAAAGATC 94553 ||||| | ||| | || |||||||||| Sbjct 55796 ATCAGGGATCCAAAGGGCGAGGAAAAGATC 55825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989560455013435