Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq147 100 2e-16 >seq147 Length=155241 Score = 100 bits (110), Expect = 2e-16 Identities = 268/398 (67%), Gaps = 24/398 (6%) Strand=Plus/Minus Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 |||||||||||| || | ||| || || ||||| |||||| | |||||||||||| Sbjct 45569 ACGTAAAACTGAGCAAACATGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGG 45510 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGT--GGGGCCGCCT---GTTAATTAGATCCA 21225 |||||||||| || | ||| || || |||| ||| || || ||| || ||| | Sbjct 45509 TTCCACGCGCTCAGCAGGATCCGGCGGTCGTACGGGTTCGTCTTGAGTT-TTTGGAT-GA 45452 Query 21226 CCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACT 21285 || || ||| ||||| || ||||| ||| |||| | | ||| | ||||| Sbjct 45451 CCTCG---GCCAGTTGGTCAACGCCCTGGCCCGTATAGTCCGTCTTGGCGTCGACGTACT 45395 Query 21286 CCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGGC 21342 | || ||||| || | ||| ||||| |||||||| || || ||||||| | |||||| Sbjct 45394 CGGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACTTCGCGGT 45335 Query 21343 GGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 || ||| || | | | | | ||| |||| || |||| ||||||| || || Sbjct 45334 GG----GAAAGGCCGACACTGTCGAGAAACTCGCGCGAGCCGTTTCCGTCCCAGATCTTG 45279 Query 21402 ACGCC-GCGGCGCGACAGTTCGGTGGAGTCG--GTGGAGCCCCTGATAAACCACAGCAAC 21458 | ||| ||| ||| ||| || ||| || ||| |||| || ||||| |||| | Sbjct 45278 ATGCCGGCGTCGC-TCAG--GGGCAGAGACGACGTGCTGCCCGCGACGAACCAGAGCAGC 45222 Query 21459 TCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGT 21496 || | |||||| | | | || || | ||| ||||| Sbjct 45221 TCGGCGACGACGGCGCGCAGGAAGACGCGTTTTGTGGT 45184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766318493360