Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 3e-16
seq653 96.9 3e-15
seq137 82.4 8e-11
>seq1
Length=623116
Score = 100 bits (110), Expect = 3e-16
Identities = 165/236 (70%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| || || || | ||| | || ||||| | ||| ||||| || || ||||| ||||||
Sbjct 265183 TGACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 265124
Query 139595 CTCATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 139652
|| | | ||| || || | ||| || ||||| |||| ||||||||||| || |
Sbjct 265123 G--ATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAG 265066
Query 139653 GAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712
|||| ||||| || ||||| ||| || || | | || | ||||| | | ||
Sbjct 265065 GAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACT 265006
Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
| || || | || | ||||||||||||||| || || ||||| ||||||||| ||
Sbjct 265005 CGACTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCATACCT 264950
>seq653
Length=48578
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608
||||| || | ||||| |||| || ||||| | || |||||| | || | || ||
Sbjct 5993 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCC 5934
Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668
||||| || | ||||| ||||| || ||| || || || | || || || |||
Sbjct 5933 ACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCC 5874
Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727
|||||| | || |||| |||| || | ||| | | ||||| ||||| || || |||
Sbjct 5873 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTC-TCATGCCTGGCCTGACCTTCTCCAA 5815
Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772
|| | || || |||||||||||| ||||||| |||||||| ||
Sbjct 5814 TGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTG 5770
>seq137
Length=159453
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || ||||| || || ||||| || ||| || |||| |
Sbjct 53354 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 53295
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| || || || |||||| || ||||| ||||| || ||||| || |||
Sbjct 53294 TCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 53235
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||||||||||| ||| |
Sbjct 53234 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 53175
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | || || ||||| || |||||
Sbjct 53174 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 53140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496052485114400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |