Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq298 165 1e-35
seq653 123 4e-23
>seq298
Length=101239
Score = 165 bits (182), Expect = 1e-35
Identities = 458/696 (66%), Gaps = 20/696 (3%)
Strand=Plus/Plus
Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956
|| |||| |||||||| | | ||| || || | | || |||| ||||| ||||||
Sbjct 55737 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 55796
Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016
||||| |||||||| || | || ||||| | || | |||||| || || |||
Sbjct 55797 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 55856
Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076
|| ||||||||||||| | | | ||| | ||||| || || | ||| ||||| |
Sbjct 55857 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 55916
Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136
| || ||||| ||||| || || || || | || | ||||||||| || | || | |
Sbjct 55917 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 55976
Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196
| ||| || | | ||| ||||| || || ||||| || | ||| ||| ||| ||| |
Sbjct 55977 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 56036
Query 80197 CGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254
||||| | | ||| ||||| || || || ||||| || || || | ||||| |
Sbjct 56037 CGAATGCGATGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-C 56093
Query 80255 GT-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
|| || | || || |||||||| || ||| || || |||| | | || || ||
Sbjct 56094 GTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCAC 56153
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
||||| |||| || || || || || || | || || || || || || |||
Sbjct 56154 GAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC 56213
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATA----GCTGA---TTCTATATCCCATTG 80426
|| |||| | ||||||||||| ||| ||| | || | | ||||
Sbjct 56214 AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGT-CACCCCA--- 56269
Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486
||| || || ||||||||||| | |||||| || || || || | |||||| ||
Sbjct 56270 ---AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATC 56326
Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546
|| || | | ||| || | ||||| || || || || || || | ||| |||||
Sbjct 56327 GATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 56386
Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582
|| ||||| | ||| |||||| ||| | |||||
Sbjct 56387 ACGGTCGTAGACAATCGCCGAGTCGAGCTCCTCCTT 56422
Score = 93.3 bits (102), Expect = 6e-14
Identities = 370/578 (64%), Gaps = 6/578 (1%)
Strand=Plus/Plus
Query 78708 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766
|||| |||| |||||| || ||||| || | || | || ||||| || ||||||||||
Sbjct 54538 CTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTC 54597
Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826
| || || ||||| || |||| || ||| ||||| || || | ||| |||
Sbjct 54598 CAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCG 54657
Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886
||||| || || || || | |||||| || ||||||||||| || | ||| ||||
Sbjct 54658 GATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAG 54717
Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946
|||| | || || || || | ||| ||||| | || || || | ||| | |
Sbjct 54718 CCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGACCT 54777
Query 78947 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003
| | || | ||| | | || |||||||| ||| || || || || | ||||| |
Sbjct 54778 CGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTCTTCA 54837
Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063
| | || ||| | | ||||| | | | || || ||||| || || |
Sbjct 54838 TGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCT 54897
Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123
| || || |||| | || | || ||| || || ||| || ||||| | | |
Sbjct 54898 GGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACT 54957
Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183
| || || |||| ||| || | ||| ||| || ||||| || || || | | ||| |
Sbjct 54958 CGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGT 55017
Query 79184 TTCTAAGACCGT-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242
| | | |||| || | |||| | ||||| | ||| ||||| ||||| || |||||
Sbjct 55018 TGCGGACGCCGTGCTGCT-TGATCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAG 55076
Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTT 79280
|| || | ||| | || || || ||||| || ||
Sbjct 55077 GGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTT 55114
>seq653
Length=48578
Score = 123 bits (136), Expect = 4e-23
Identities = 153/209 (73%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || |||||| |||||| || ||||| | | || ||||| ||||| || || ||
Sbjct 5770 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 5829
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| ||||| || |||||||| || |||||||| ||||||||||| | || || ||||||
Sbjct 5830 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 5889
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGT 50136
|| || || || || || ||||| ||||| | || | || ||| | ||| |
Sbjct 5890 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 5949
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165
|||||||| | ||||| |||||||||||
Sbjct 5950 ATCCACTTGAGGGCCCAGTCGGCCTTCTT 5978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718252127185480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |