Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq298 138 2e-27 seq653 104 3e-17 >seq298 Length=101239 Score = 138 bits (152), Expect = 2e-27 Identities = 452/696 (65%), Gaps = 20/696 (3%) Strand=Plus/Plus Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 || || || |||||||| | | ||| || || | | | |||| ||||| |||||| Sbjct 55737 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 55796 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| |||||||| || | || ||||| | || | |||||| || || ||| Sbjct 55797 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 55856 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||||||||||| | | | ||| | ||||| || || | ||| ||||| | Sbjct 55857 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 55916 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || || || || | || | ||||||||| || | || | | Sbjct 55917 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 55976 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| || | | ||| ||||| | || ||||| || | ||| ||| ||| ||| | Sbjct 55977 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 56036 Query 72280 CGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 ||||| || ||| ||||| || || || ||||| || || || | ||||| | Sbjct 56037 CGAATGCGATGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-C 56093 Query 72338 GT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 || || | || || |||||||| || || || ||| |||| | | || || || Sbjct 56094 GTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCAC 56153 Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| |||| || || || || || || | || || || || || || ||| Sbjct 56154 GAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC 56213 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATA----GCTGA---TTCTATATCCCATTG 72509 || |||| | ||||||||||| ||| ||| | || | | |||| Sbjct 56214 AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGT-CACCCCA--- 56269 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569 || || || ||||||||||| | ||| || || || || || | |||||| || Sbjct 56270 ---AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATC 56326 Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 || || | | ||| || | ||||| || || || || || || | ||| ||||| Sbjct 56327 GATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 56386 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || ||||| | ||| |||| | ||| | ||||| Sbjct 56387 ACGGTCGTAGACAATCGCCGAGTCGAGCTCCTCCTT 56422 >seq653 Length=48578 Score = 104 bits (114), Expect = 3e-17 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || |||||| |||||| || || || | | || | ||| ||||| || || || Sbjct 5770 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 5829 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || |||||||| || |||||||| || |||||||| | || || |||||| Sbjct 5830 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 5889 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATG 42240 || || || || || || ||||| | ||| | || | || || ||| ||| | Sbjct 5890 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGG-ACTTCTGGTCGTT 5948 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 |||||||| | ||||| ||||||||||| Sbjct 5949 GATCCACTTGAGGGCCCAGTCGGCCTTCTT 5978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123621181320