Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq298 138 2e-27
seq653 104 3e-17
>seq298
Length=101239
Score = 138 bits (152), Expect = 2e-27
Identities = 452/696 (65%), Gaps = 20/696 (3%)
Strand=Plus/Plus
Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039
|| || || |||||||| | | ||| || || | | | |||| ||||| ||||||
Sbjct 55737 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 55796
Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099
||||| |||||||| || | || ||||| | || | |||||| || || |||
Sbjct 55797 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 55856
Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159
|| ||||||||||||| | | | ||| | ||||| || || | ||| ||||| |
Sbjct 55857 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 55916
Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219
| || || || ||||| || || || || | || | ||||||||| || | || | |
Sbjct 55917 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 55976
Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279
| ||| || | | ||| ||||| | || ||||| || | ||| ||| ||| ||| |
Sbjct 55977 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 56036
Query 72280 CGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337
||||| || ||| ||||| || || || ||||| || || || | ||||| |
Sbjct 56037 CGAATGCGATGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-C 56093
Query 72338 GT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396
|| || | || || |||||||| || || || ||| |||| | | || || ||
Sbjct 56094 GTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCAC 56153
Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456
||||| |||| || || || || || || | || || || || || || |||
Sbjct 56154 GAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC 56213
Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATA----GCTGA---TTCTATATCCCATTG 72509
|| |||| | ||||||||||| ||| ||| | || | | ||||
Sbjct 56214 AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGT-CACCCCA--- 56269
Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569
|| || || ||||||||||| | ||| || || || || || | |||||| ||
Sbjct 56270 ---AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATC 56326
Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629
|| || | | ||| || | ||||| || || || || || || | ||| |||||
Sbjct 56327 GATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 56386
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665
|| ||||| | ||| |||| | ||| | |||||
Sbjct 56387 ACGGTCGTAGACAATCGCCGAGTCGAGCTCCTCCTT 56422
>seq653
Length=48578
Score = 104 bits (114), Expect = 3e-17
Identities = 150/210 (71%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| || |||||| |||||| || || || | | || | ||| ||||| || || ||
Sbjct 5770 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 5829
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|| ||||| || |||||||| || |||||||| || |||||||| | || || ||||||
Sbjct 5830 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 5889
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATG 42240
|| || || || || || ||||| | ||| | || | || || ||| ||| |
Sbjct 5890 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGG-ACTTCTGGTCGTT 5948
Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTT 42270
|||||||| | ||||| |||||||||||
Sbjct 5949 GATCCACTTGAGGGCCCAGTCGGCCTTCTT 5978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671123621181320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |