Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1 87.8 2e-12
>seq1
Length=623116
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014
|| || || || | ||| | || || || | || || || || || ||||||||||||
Sbjct 265183 TGACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 265124
Query 143015 CTCATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 143072
|| | | ||| || || | || || ||||| |||| ||||||||||| || |
Sbjct 265123 G--ATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAG 265066
Query 143073 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTT 143132
|||| ||||| || ||||| || || || | | || | ||||| | | |
Sbjct 265065 GAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACT 265006
Query 143133 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
| ||||| | ||| | ||||||||||||||| || || ||||| ||||||||| ||
Sbjct 265005 CGACTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCATACCT 264950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507002630928240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |