Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 82.4 6e-11
>seq1
Length=623116
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| |||||| ||||||||||| ||||| |||||||| | | || | |||||
Sbjct 264935 CACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTC 264876
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|| ||||| || || | || || | |||||| || || | ||||| |||||
Sbjct 264875 AAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 264816
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||| ||| || || | | ||| ||||| || ||| || | |||||||| ||
Sbjct 264815 AATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTT 264756
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||| ||||| ||||| |||||
Sbjct 264755 GCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414563417310658
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |